Factsheet for VIT_14s0128g00020.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 3
vacuole 3
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P01860_001	Banana	plasma membrane	65.25	65.25
VIT_14s0030g00710.t01	Wine grape	plasma membrane	62.66	62.89
VIT_07s0104g01280.t01	Wine grape	plasma membrane	57.86	62.73
VIT_05s0020g01960.t01	Wine grape	plasma membrane	61.18	61.18
VIT_19s0090g01480.t01	Wine grape	plasma membrane	54.71	56.81
VIT_15s0024g00280.t01	Wine grape	golgi, plasma membrane	14.42	24.76
VIT_15s0024g00260.t01	Wine grape	plasma membrane	10.54	23.55

Protein Annotations

Gene3D:1.20.1530.20	EntrezGene:100264772	wikigene:100264772	MapMan:24.2.8.1.1	ProteinID:CBI36732	ProteinID:CBI36732.3
InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	UniProt:D7U1W6	EMBL:FN596501	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005886	GO:GO:0006810	GO:GO:0006811	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885
GO:GO:0008150	GO:GO:0009987	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385	GO:GO:0015386
GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0051453	GO:GO:0055085	GO:GO:0071805
GO:GO:0090333	GO:GO:0098719	GO:GO:1902600	InterPro:IPR038770	EntrezGene:LOC100264772	wikigene:LOC100264772
InterPro:Na+/solute_symporter_sf	InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF107
TIGRFAMs:TIGR00840	TMHMM:TMhelix	UniParc:UPI00015C9DF7	ArrayExpress:VIT_14s0128g00020	EnsemblPlantsGene:VIT_14s0128g00020	EnsemblPlants:VIT_14s0128g00020.t01
unigene:Vvi.13917	RefSeq:XP_002281198	RefSeq:XP_002281198.2	SEG:seg	:	:

Description

Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:D7U1W6]

Coordinates

chr14:-:2600592..2606971

Molecular Weight (calculated)

59411.5 Da

IEP (calculated)

6.597

GRAVY (calculated)

0.560

Length

541 amino acids

Sequence
(BLAST)

001: MGFLDAIPNK HSLQDSSSFL NTTTVIALCL FFALLCACIV IGHLLEEHRW ANESITALLL GLCAGVVVLL VSKGRSSKIL AFNEDLFFLY LLPPIIFNAG
101: FQVKKKQFFK NFSIILMFGV FGTIISFCLI SAGAFLLFKK IGITTLNIED YLAVGAILSA TDSVCTLQVL NQEETPFLYS VVFGEGVVND ATSIVIYNAV
201: QSLDLSNIDA LTALKLLGTF LYLFFTSTIL GVVAGLLSAY IIKTLYFGRH STDREVALMM IMAYLSYMLA ELLSLSGILT VFFCGIVMSH YTWHNVTESS
301: RITTKHAFAT ISFIAETFIF LYVGMDALDI DKWRSSKASA GTSVSVSSAF LALVLIGRAA FVFSLSNILN FFKSAESTKV EFRQQFIIWW AGLMRGAVTI
401: ALSYSEFSDS ETTSTQDSAL MITSTIIVVL FSTVVFGSIT KPLIGAVLLR HAKPTVSDAT DIASLEDLRL LFLENGDPSD GGNNQPSPKA SNLRLLMRYP
501: TSTAHYFWRK FDDKYMRPMF GGRGFVPYVP GSPTGAQDET S

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.