Factsheet for VIT_19s0090g01480.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
extracellular 3
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46278	Soybean	plasma membrane	75.62	74.48
AT5G55470.1	Thale cress	plasma membrane	73.51	72.4
Solyc10g006080.1.1	Tomato	plasma membrane	72.36	71.81
Bra002905.1-P	Field mustard	plasma membrane	72.17	70.54
CDY17324	Canola	plasma membrane	71.98	70.36
PGSC0003DMT400085382	Potato	plasma membrane	72.94	69.34
GSMUA_Achr5P04100_001	Banana	plasma membrane	68.71	68.85
CDY45655	Canola	plasma membrane	69.87	68.81
Bra009647.1-P	Field mustard	cytosol	9.02	66.2
KXG19894	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	67.18	66.04
TraesCS7A01G228400.1	Wheat	plasma membrane	65.83	65.09
HORVU7Hr1G046030.1	Barley	plasma membrane	65.64	64.9
TraesCS7D01G226200.1	Wheat	plasma membrane	65.26	64.52
TraesCS7B01G191300.1	Wheat	plasma membrane	65.07	64.33
Os06t0318500-00	Rice	plasma membrane	66.6	64.14
Zm00001d045883_P001	Maize	plasma membrane	66.41	63.49
VIT_07s0104g01280.t01	Wine grape	plasma membrane	56.24	58.72
VIT_14s0030g00710.t01	Wine grape	plasma membrane	60.46	58.44
VIT_05s0020g01960.t01	Wine grape	plasma membrane	60.27	58.04
VIT_14s0128g00020.t01	Wine grape	plasma membrane	56.81	54.71
VIT_15s0024g00280.t01	Wine grape	golgi, plasma membrane	15.16	25.08
VIT_15s0024g00260.t01	Wine grape	plasma membrane	10.56	22.73

Protein Annotations

Gene3D:1.20.1530.20	EntrezGene:100258969	wikigene:100258969	MapMan:24.2.8.1.1	ProteinID:CCB50711	ProteinID:CCB50711.1
InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	UniProt:F6HEL8	EMBL:FN595751	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005886	GO:GO:0006810	GO:GO:0006811	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885
GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0015297
GO:GO:0015299	GO:GO:0015385	GO:GO:0015386	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725
GO:GO:0051453	GO:GO:0055075	GO:GO:0055085	GO:GO:0071805	GO:GO:0098719	GO:GO:1902600
InterPro:IPR038770	EntrezGene:LOC100258969	wikigene:LOC100258969	InterPro:NHX4	InterPro:Na+/solute_symporter_sf	InterPro:NaH_exchanger
PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF101	TIGR:TC56521	TIGRFAMs:TIGR00840
TMHMM:TMhelix	UniParc:UPI000198561B	ArrayExpress:VIT_19s0090g01480	EnsemblPlantsGene:VIT_19s0090g01480	EnsemblPlants:VIT_19s0090g01480.t01	unigene:Vvi.7965
RefSeq:XP_002276813	RefSeq:XP_002276813.1	SEG:seg	:	:	:

Description

Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:F6HEL8]

Coordinates

chr19:-:7518928..7525059

Molecular Weight (calculated)

57996.1 Da

IEP (calculated)

8.618

GRAVY (calculated)

0.525

Length

521 amino acids

Sequence
(BLAST)

001: MSASGFAMNI AGDHAQVVLI SVFVAVLCLC LVIGHLLEEN RWLNESTTAI IIGCITGTII LLLSKGKSSH ILRFNEELFF IYLLPPIIFN AGFQVKKKQF
101: FQNFITIMLF GVIGVFISSS IITAGAWWLF PRFGFTGLSA QDYLAIGTIF SSTDTVCTLQ VLHQDETPLL YSLVFGEGVV NDATSVVLFN AVQKLDKSKL
201: NGWAALRVLL DSLYLFSTST ALGVVAGLLT AYTLKTLYIG RHSTVREIAL MVLMAYLSYT LAELFHLSGI LTVFFCGILM SHYASHNVTQ SSRITTRHIF
301: ATMSFIAETF IFLYVGIDAL DIEKWKLSKL SFRTSVGIYS TVVLLISLGR AAFVFPLSTF SNYVHRRADR LSSISFKHQV IIWWAGLMRG AVSIALAFKQ
401: FTYSGVTLDP ANATMVTTTI IVVLFTTLVF GFLTKPLISF LQPHHTNNNT SHGEPRSPKE DLSLPLLSLE ESAETNILRA KESLSMLIER PVYTIHNYWR
501: KFDDTYMRPV FGGPCRDQSA C

Best Arabidopsis Sequence Match ( AT5G55470.1 )
(BLAST)

001: MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV LFNAVQKIQF
201: ESLTGWTALQ VFGNFLYLFS TSTLLGIGVG LITSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR
301: HVFAMLSFIA ETFIFLYVGT DALDFTKWKT SSLSFGGTLG VSGVITALVL LGRAAFVFPL SVLTNFMNRH TERNESITFK HQVIIWWAGL MRGAVSIALA
401: FKQFTYSGVT LDPVNAAMVT NTTIVVLFTT LVFGFLTKPL VNYLLPQDAS HNTGNRGKRT EPGSPKEDAT LPLLSFDESA STNFNRAKDS ISLLMEQPVY
501: TIHRYWRKFD DTYMRPIFGG PRRENQPEC

Arabidopsis Description

NHX4Sodium/hydrogen exchanger 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S397]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.