Factsheet for PGSC0003DMT400085382

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
vacuole 3
extracellular 2
endoplasmic reticulum 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g006080.1.1	Tomato	plasma membrane	91.06	95.05
VIT_19s0090g01480.t01	Wine grape	plasma membrane	69.34	72.94
AT5G55470.1	Thale cress	plasma membrane	68.43	70.89
KRH46278	Soybean	plasma membrane	67.88	70.32
Bra002905.1-P	Field mustard	plasma membrane	68.07	69.98
CDY17324	Canola	plasma membrane	68.07	69.98
Bra009647.1-P	Field mustard	cytosol	8.94	69.01
CDY45655	Canola	plasma membrane	65.88	68.24
GSMUA_Achr5P04100_001	Banana	plasma membrane	62.59	65.96
HORVU7Hr1G046030.1	Barley	plasma membrane	61.5	63.95
TraesCS7A01G228400.1	Wheat	plasma membrane	61.5	63.95
TraesCS7D01G226200.1	Wheat	plasma membrane	61.31	63.76
TraesCS7B01G191300.1	Wheat	plasma membrane	61.13	63.57
KXG19894	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	61.13	63.21
Os06t0318500-00	Rice	plasma membrane	60.77	61.55
Zm00001d045883_P001	Maize	plasma membrane	61.13	61.47
PGSC0003DMT400027658	Potato	plasma membrane	57.3	58.47
PGSC0003DMT400056555	Potato	plasma membrane	26.82	58.33
PGSC0003DMT400057913	Potato	plasma membrane	56.02	57.28
PGSC0003DMT400056556	Potato	golgi, plasma membrane	29.56	52.94

Protein Annotations

MapMan:24.2.8.1.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886
GO:GO:0006810	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950	GO:GO:0008150
GO:GO:0009628	GO:GO:0009651	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385	GO:GO:0016020
GO:GO:0016021	GO:GO:0035725	GO:GO:0055075	GO:GO:0055085	GO:GO:1902600	UniProt:M1D9E1
InterPro:NHX4	InterPro:NaH_exchanger	PFAM:PF00999	EnsemblPlantsGene:PGSC0003DMG400034953	PGSC:PGSC0003DMG400034953	EnsemblPlants:PGSC0003DMT400085382
PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF101	TMHMM:TMhelix	UniParc:UPI000295010B	SEG:seg

Description

Sodium/hydrogen exchanger [Source:PGSC_GENE;Acc:PGSC0003DMG400034953]

Coordinates

chr10:+:1065667..1072774

Molecular Weight (calculated)

61770.8 Da

IEP (calculated)

7.980

GRAVY (calculated)

0.524

Length

548 amino acids

Sequence
(BLAST)

001: MELFDYVNDN SSHEMVVSIT VFVAILCLCL VIGHLLEENR WVNESITAII VGLISGTVIL LISKGKSSHI LRFNEEVFFI YLLPPIIFNA GYQVKKKQFF
101: HNFLTIMSFG VIGVFISSSI IASGSWWIFP KLNFNGLTIR DYLGIGAIFS ATDTVCTLQV LHQDETPLLY SLVFGEGVVN DATSVVLFNA VQKIDVARFN
201: GWSAFHVFLD FLYLFSTSTC LGVVVSLLTL LIPYYAGLIT SYILKGLYFG RHSTVREISL MLLMAYLSYM LAELWSLSGI LTVFFSGILM SHYAWHNVTD
301: SSRITTRHAF EAMSFIAETF IFLYVGMDAL DIEKWKMSQQ RISKTKQNKA DSFISSLAGS VWTSMGIYIT VLMLMAIGRA AFVFPLSVLS NFMNRNATRT
401: PPITFKHQIV IWWAGLMRGA VSIALAFKQF TFSGVTIDPV HAVMVTTTVV VVLFSTLVFG FLTKPLIHHL LPHNDSRRGI DRESSISKET LPLLSFDESA
501: TTNLLRAKDS LSMLLQRPVY TIHSYWRRFD DTYMRPVFCS PTINEESV

Best Arabidopsis Sequence Match ( AT5G55470.1 )
(BLAST)

001: MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV LFNAVQKIQF
201: ESLTGWTALQ VFGNFLYLFS TSTLLGIGVG LITSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR
301: HVFAMLSFIA ETFIFLYVGT DALDFTKWKT SSLSFGGTLG VSGVITALVL LGRAAFVFPL SVLTNFMNRH TERNESITFK HQVIIWWAGL MRGAVSIALA
401: FKQFTYSGVT LDPVNAAMVT NTTIVVLFTT LVFGFLTKPL VNYLLPQDAS HNTGNRGKRT EPGSPKEDAT LPLLSFDESA STNFNRAKDS ISLLMEQPVY
501: TIHRYWRKFD DTYMRPIFGG PRRENQPEC

Arabidopsis Description

NHX4Sodium/hydrogen exchanger 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S397]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.