Factsheet for PGSC0003DMT400056556

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi

Predictor Summary:

nucleus 1
plastid 2
golgi 3
vacuole 3
extracellular 2
endoplasmic reticulum 2
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	golgi
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g008820.2.1	Tomato	plasma membrane	96.73	55.43
VIT_07s0104g01280.t01	Wine grape	plasma membrane	67.97	41.68
GSMUA_Achr8P21980_001	Banana	plasma membrane	71.57	40.41
GSMUA_Achr11P...	Banana	plasma membrane	70.26	40.04
GSMUA_Achr3P23840_001	Banana	plasma membrane	70.26	40.04
GSMUA_Achr8P06790_001	Banana	plasma membrane	69.93	39.78
GSMUA_Achr10P...	Banana	plasma membrane	68.95	38.86
GSMUA_Achr2P01560_001	Banana	plasma membrane	67.97	38.66
KXG36886	Sorghum	plasma membrane	67.65	38.62
Zm00001d022504_P001	Maize	plasma membrane	67.97	38.59
PGSC0003DMT400027658	Potato	plasma membrane	67.65	38.55
Os07t0666900-01	Rice	vacuole	67.32	38.5
TraesCS4B01G125700.1	Wheat	golgi, plasma membrane, vacuole	63.4	37.89
TraesCS2A01G121000.1	Wheat	plasma membrane	66.34	37.73
PGSC0003DMT400057913	Potato	plasma membrane	65.69	37.5
TraesCS2D01G123000.1	Wheat	plasma membrane, vacuole	64.71	36.8
HORVU2Hr1G021020.4	Barley	plasma membrane	67.32	36.4
EES10186	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	64.05	36.23
TraesCS4A01G145300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	63.73	36.11
TraesCS4D01G147600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	63.73	36.04
Os11t0648000-01	Rice	plasma membrane	64.05	35.96
GSMUA_Achr6P20250_001	Banana	plasma membrane	66.67	35.6
Zm00001d048732_P005	Maize	plasma membrane	62.42	34.98
KXG21297	Sorghum	plasma membrane	60.46	33.88
TraesCS1D01G093900.1	Wheat	plasma membrane	60.13	33.7
TraesCS1B01G112700.1	Wheat	plasma membrane	60.13	33.7
TraesCS1A01G102300.1	Wheat	plasma membrane	60.13	33.7
HORVU1Hr1G020360.2	Barley	plasma membrane	59.8	33.52
Zm00001d024832_P002	Maize	plasma membrane	60.46	33.09
Os05t0148600-01	Rice	plasma membrane	58.82	33.09
HORVU4Hr1G033760.1	Barley	mitochondrion, plastid	64.05	30.39
PGSC0003DMT400085382	Potato	plasma membrane	52.94	29.56
TraesCS2B01G141900.1	Wheat	plasma membrane	56.86	29.1
Zm00001d028330_P048	Maize	plasma membrane	34.31	19.44
Zm00001d026118_P021	Maize	nucleus, peroxisome, plasma membrane	42.81	18.61
Zm00001d021844_P003	Maize	mitochondrion	45.75	14.91
Zm00001d048459_P007	Maize	plasma membrane	22.22	14.2
Zm00001d025052_P007	Maize	plasma membrane	18.3	10.77
Zm00001d003728_P056	Maize	cytosol, plasma membrane, vacuole	26.14	10.15
PGSC0003DMT400056555	Potato	plasma membrane	3.27	3.97

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005886	GO:GO:0006810	GO:GO:0006812	GO:GO:0006814	GO:GO:0006950	GO:GO:0008150
GO:GO:0009628	GO:GO:0009651	GO:GO:0015297	GO:GO:0015299	GO:GO:0016020	GO:GO:0016021
GO:GO:0055075	GO:GO:0055085	GO:GO:1902600	InterPro:IPR038770	UniProt:M1BZL8	InterPro:Na+/solute_symporter_sf
InterPro:Na/H_exchanger_plant	PFAM:PF00999	EnsemblPlantsGene:PGSC0003DMG402021988	PGSC:PGSC0003DMG402021988	EnsemblPlants:PGSC0003DMT400056556	PANTHER:PTHR10110
PANTHER:PTHR10110:SF117	TMHMM:TMhelix	UniParc:UPI0002950B29	SEG:seg	:	:

Description

Sodium/hydrogen exchanger [Source:PGSC_GENE;Acc:PGSC0003DMG402021988]

Coordinates

chr6:-:815314..818676

Molecular Weight (calculated)

34274.0 Da

IEP (calculated)

9.328

GRAVY (calculated)

0.291

Length

306 amino acids

Sequence
(BLAST)

001: MQIGLLSAYL IKKIYLGRHS TDREVALMIL MAYLSYVMAE LFDLSGILTV FICGIVMSHY TWHNVTVNSK VTTRHAFATL SFIAEIFIFL YVGMDALDIE
101: KWRFVKDSPG KSVGVSAALL GLVLVGRACF VFPLSLLSNF LKRSEHDKFG LKQQVTIWWA GLMRGSVSMA LAYNQFTRFG HTQQPGNAVM ITSTITIVLF
201: STVVFGLITK PLVRFLLPSS QGFNNLISSE QSFARPLLTN GQELEVEMGN VDPFRPSSLS ILLKEPSHTI HNHWRRFDDA FMRPLFGGRG FVPDAPELSK
301: GGCDQY

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.