Factsheet for TraesCS2D01G123000.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, vacuole

Predictor Summary:

mitochondrion 2
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, vacuole
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
TargetP:	mitochondrion

plasma membrane: 24223765
vacuole: 24448321

gfp PMID: 24448321 doi

W Lu, C Guo, X Li, W Duan, C Ma, M Zhao, J Gu, X Du, Z Liu, K Xiao

College of Agronomy, Agricultural University of Hebei, Baoding 071001, China. , College of Life Sciences, Agricultural University of Hebei, Baoding 071001, China., Science & Technology College, North China Electric Power University, Baoding 071051, China.

gfp PMID: 24223765 doi

Y Xu, Y Zhou, S Hong, Z Xia, D Cui, J Guo, H Xu, X Jiang

College of Agronomy/Key laboratory of Physiological Ecology and Genetic Improvement of Food Crops in Henan Province, Henan Agricultural University, Zhengzhou, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G121000.1	Wheat	plasma membrane	98.88	98.88
HORVU2Hr1G021020.4	Barley	plasma membrane	95.35	90.64
Zm00001d022504_P001	Maize	plasma membrane	87.92	87.76
KXG36886	Sorghum	plasma membrane	87.17	87.5
Os07t0666900-01	Rice	vacuole	86.62	87.1
GSMUA_Achr8P21980_001	Banana	plasma membrane	78.81	78.23
GSMUA_Achr11P...	Banana	plasma membrane	77.7	77.84
GSMUA_Achr10P...	Banana	plasma membrane	75.46	74.77
TraesCS2B01G141900.1	Wheat	plasma membrane	81.78	73.58
PGSC0003DMT400027658	Potato	plasma membrane	72.86	73.0
Solyc01g067710.2.1	Tomato	plasma membrane	72.86	73.0
VIT_05s0020g01960.t01	Wine grape	plasma membrane	72.86	72.46
KRH02192	Soybean	plasma membrane	71.93	72.2
VIT_07s0104g01280.t01	Wine grape	plasma membrane	65.43	70.54
TraesCS4D01G147600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	70.45	70.06
PGSC0003DMT400056555	Potato	plasma membrane	31.78	67.86
Solyc06g008820.2.1	Tomato	plasma membrane	66.73	67.23
AT3G06370.3	Thale cress	plasma membrane	68.22	66.49
TraesCS1D01G093900.1	Wheat	plasma membrane	66.73	65.75
Bra020755.1-P	Field mustard	plasma membrane	65.8	65.56
CDY24699	Canola	plasma membrane	67.84	65.41
CDY05257	Canola	plasma membrane	68.03	65.36
PGSC0003DMT400056556	Potato	golgi, plasma membrane	36.8	64.71
KRH50930	Soybean	mitochondrion	71.75	61.27
TraesCS7D01G226200.1	Wheat	plasma membrane	56.69	57.87
TraesCS5D01G268200.1	Wheat	plasma membrane	26.58	26.88
TraesCS5D01G180800.1	Wheat	plasma membrane	26.58	26.78
TraesCS7D01G241200.1	Wheat	plasma membrane	26.58	26.34

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005886	GO:GO:0006810	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950
GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0015299	GO:GO:0015385	GO:GO:0016020
GO:GO:0016021	GO:GO:0055075	GO:GO:0055085	InterPro:IPR038770	InterPro:Na+/solute_symporter_sf	InterPro:Na/H_exchanger_plant
InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF117	TIGRFAMs:TIGR00840
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2D01G123000	EnsemblPlants:TraesCS2D01G123000.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2D:-:71767337..71771197

Molecular Weight (calculated)

58546.2 Da

IEP (calculated)

8.139

GRAVY (calculated)

0.597

Length

538 amino acids

Sequence
(BLAST)

001: MGYQVVAAQL ARLSGALGTS DHASVVSITL FVALLCACIV LGHLLEENRW LNESITALII GLCTGVVILM TTKGKSSHVL VFSEDLFFIY LLPPIIFNAG
101: FQVKKKQFFR NFMTITLFGA VGTMMSFFTI SLAAIAIFSR MNIGTLDVSD FLAIGAIFSA TDSVCTLQVL NQDETPFLYS LVFGEGVVND ATSVVLFNAL
201: QNFDPNQIDA IVILKFLGNF CYLFVSSTFL GVFTGLLSAY VIKKLYIGRH STDREVALVM LMAYLSYMLA ELLDLSGILT VFFCGIVMSH YTWHNVTESS
301: RVTTKHAFAT LSFIAETFLF LYVGMDALDI EKWKFASDXX XXXXGISSIL LGLVLVGRAA FVFPLSFLSN LTKKTELEKI SWRQQIVIWW AGLMRGAVSI
401: ALAYNKFTRS GHTQLHGNAI MITSTITVVL FSTMLFGILT KPLIRFLLPA SSNGAASDPA SPKSLHSPLL TSQLGSDLEA PLPIVRPSSL RMLITKPTHT
501: IHYYWRKFDD ALMRPMFGGR GFVPYSPGSP TDPNVLVE

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.