Factsheet for Solyc06g008820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056556	Potato	golgi, plasma membrane	55.43	96.73
PGSC0003DMT400056555	Potato	plasma membrane	44.38	94.05
GSMUA_Achr8P21980_001	Banana	plasma membrane	73.41	72.32
GSMUA_Achr11P...	Banana	plasma membrane	72.28	71.88
GSMUA_Achr8P06790_001	Banana	plasma membrane	70.79	70.26
VIT_07s0104g01280.t01	Wine grape	plasma membrane	65.36	69.94
GSMUA_Achr3P23840_001	Banana	plasma membrane	70.22	69.83
KXG36886	Sorghum	plasma membrane	69.85	69.59
Solyc01g067710.2.1	Tomato	plasma membrane	69.85	69.46
Zm00001d022504_P001	Maize	plasma membrane	69.85	69.2
Os07t0666900-01	Rice	vacuole	68.91	68.78
GSMUA_Achr10P...	Banana	plasma membrane	69.66	68.51
TraesCS2A01G121000.1	Wheat	plasma membrane	68.16	67.66
Solyc01g098190.2.1	Tomato	plasma membrane	67.23	66.98
TraesCS2D01G123000.1	Wheat	plasma membrane, vacuole	67.23	66.73
GSMUA_Achr2P01560_001	Banana	plasma membrane	67.04	66.54
GSMUA_Achr6P20250_001	Banana	plasma membrane	70.22	65.44
HORVU2Hr1G021020.4	Barley	plasma membrane	68.54	64.66
TraesCS4A01G145300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	65.17	64.44
EES10186	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	65.17	64.33
TraesCS4D01G147600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	64.98	64.14
Os11t0648000-01	Rice	plasma membrane	65.36	64.04
Zm00001d048732_P005	Maize	plasma membrane	64.98	63.55
KXG21297	Sorghum	plasma membrane	64.98	63.55
Os05t0148600-01	Rice	plasma membrane	64.42	63.24
TraesCS4B01G125700.1	Wheat	golgi, plasma membrane, vacuole	60.3	62.89
TraesCS1A01G102300.1	Wheat	plasma membrane	64.04	62.64
TraesCS1D01G093900.1	Wheat	plasma membrane	63.86	62.45
TraesCS1B01G112700.1	Wheat	plasma membrane	63.86	62.45
HORVU1Hr1G020360.2	Barley	plasma membrane	63.67	62.27
Zm00001d024832_P002	Maize	plasma membrane	64.79	61.9
Solyc10g006080.1.1	Tomato	plasma membrane	56.18	57.14
TraesCS2B01G141900.1	Wheat	plasma membrane	62.92	56.19
HORVU4Hr1G033760.1	Barley	mitochondrion, plastid	64.79	53.64
Zm00001d028330_P048	Maize	plasma membrane	47.57	47.04
Zm00001d026118_P021	Maize	nucleus, peroxisome, plasma membrane	39.89	30.26
Zm00001d048459_P007	Maize	plasma membrane	26.97	30.06
Zm00001d025052_P007	Maize	plasma membrane	24.53	25.19
Solyc04g056600.2.1	Tomato	plasma membrane	24.16	24.29
Zm00001d021844_P003	Maize	mitochondrion	42.13	23.96
Zm00001d003728_P056	Maize	cytosol, plasma membrane, vacuole	29.21	19.8

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774
GO:GO:0005886	GO:GO:0006810	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950
GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0015297	GO:GO:0015299
GO:GO:0015385	GO:GO:0015386	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0035725
GO:GO:0051453	GO:GO:0055075	GO:GO:0055085	GO:GO:0071805	GO:GO:0098719	GO:GO:1902600
InterPro:IPR038770	UniProt:K4C3R2	InterPro:Na+/solute_symporter_sf	InterPro:Na/H_exchanger_plant	InterPro:NaH_exchanger	PFAM:PF00999
PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF117	EnsemblPlantsGene:Solyc06g008820.2	EnsemblPlants:Solyc06g008820.2.1	TMHMM:TMhelix
UniParc:UPI0002766AF3	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:+:2764067..2770677

Molecular Weight (calculated)

59053.5 Da

IEP (calculated)

7.085

GRAVY (calculated)

0.502

Length

534 amino acids

Sequence
(BLAST)

001: MGLDAVARLG VSILSDGDQV SVDSITLFVA LLCGCIVIGH LLEESRWIND SITALVIGLS TGGIILLTTK GKSSHLLEFD EQLFFIYVLP PIIFNAGFQV
101: KKKQFFRNFV TIMLFGAVGT LISFSIISFG AKELLGKLDI GFLELRDYLA IGAIFSATDS VCTLQVLNQD ETPRLYSLVF GEGVVNDATS VVLFNAIQKL
201: DLSHINSRAA LVFTGNFLYL FLASTFLGVL IGLLSAYLIK KIYLGRHSTD REVALMILMA YLSYVMAELF DLSGILTVFI CGIVMSHYTW HNVTFNSKVT
301: TRHAFATLSF IAEIFIFLYV GMDALDIEKW RFVKDSPGKS VGVSAALLGL VLVGRACFVF PLSLFSNCLK RSEHDKFGLK QQVTIWWAGL MRGSVSMALA
401: YNQFTRFGHT QQPGNAVMIT STITIVLFST VVFGLITKPL VRFLLPSSQG FNNLISSEQS FARPLLTNEQ ELELEMGNVD PVRPSGLSIL LKEPSYTIHN
501: HWRRFDDAFM RPLFGGRGFV PDAPELSKGG CDQY

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.