Factsheet for Solyc10g006080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
plasma membrane 5
vacuole 3
extracellular 2
endoplasmic reticulum 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400085382	Potato	plasma membrane	95.05	91.06
VIT_19s0090g01480.t01	Wine grape	plasma membrane	71.81	72.36
AT5G55470.1	Thale cress	plasma membrane	71.05	70.51
KRH46278	Soybean	plasma membrane	71.05	70.51
Bra009647.1-P	Field mustard	cytosol	9.52	70.42
Bra002905.1-P	Field mustard	plasma membrane	69.9	68.86
CDY17324	Canola	plasma membrane	69.9	68.86
CDY45655	Canola	plasma membrane	67.62	67.11
GSMUA_Achr5P04100_001	Banana	plasma membrane	65.14	65.77
HORVU7Hr1G046030.1	Barley	plasma membrane	64.19	63.95
TraesCS7A01G228400.1	Wheat	plasma membrane	64.19	63.95
TraesCS7D01G226200.1	Wheat	plasma membrane	64.0	63.76
TraesCS7B01G191300.1	Wheat	plasma membrane	63.81	63.57
KXG19894	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	64.0	63.4
Os06t0318500-00	Rice	plasma membrane	64.0	62.11
Zm00001d045883_P001	Maize	plasma membrane	64.19	61.83
Solyc01g067710.2.1	Tomato	plasma membrane	59.24	57.91
Solyc01g098190.2.1	Tomato	plasma membrane	58.1	56.9
Solyc06g008820.2.1	Tomato	plasma membrane	57.14	56.18
Solyc04g056600.2.1	Tomato	plasma membrane	25.52	25.24

Protein Annotations

MapMan:24.2.8.1.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886
GO:GO:0006810	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950	GO:GO:0008150
GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385
GO:GO:0015386	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0051453	GO:GO:0055075
GO:GO:0055085	GO:GO:0071805	GO:GO:0098719	GO:GO:1902600	UniProt:K4CXE0	InterPro:NHX4
InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF101	EnsemblPlantsGene:Solyc10g006080.1
EnsemblPlants:Solyc10g006080.1.1	TMHMM:TMhelix	UniParc:UPI000276CB87	SEG:seg	:	:

Description

Sodium/hydrogen exchanger 4 [Source:Projected from Arabidopsis thaliana (AT5G55470) UniProtKB/Swiss-Prot;Acc:Q8S397]

Coordinates

chr10:+:805529..809760

Molecular Weight (calculated)

59159.7 Da

IEP (calculated)

8.449

GRAVY (calculated)

0.553

Length

525 amino acids

Sequence
(BLAST)

001: MALFNYVNFI GHKNSHEMVV PITLFVAILC ICLVIGSLFE ENRWVNESIT AIIIGLISGT IILLISKGKS SHILRFNEEV FFIYLLPPII FNAGFQVKKK
101: QFFHNFLTIM SFGVIGVFIS SSIIASGSWW IFPKLNFNGL TIRDYLGIGA IFSSTDTVCT LQVLHQDETP LLYSLVFGEG VVNDATSVVL FNAVQKIDVA
201: RFNGWSAFHV FLDFLYLFST STCLGVAVGL ITSYILKGLY FGRHSTVREI SLMLLMAYLS YMLAELWNLS GILTVFFSGI LMSHYAWHNV TDSSRITTRH
301: AFEAMSFIAE TFIFLYVGMD ALDIEKWKMS QQSLAGSVWT SMGIYVTVLV LMAIGRAAFV FPLSVLSNFM NRNARRTPPI TFKHQIVIWW AGLMRGAVSI
401: ALAFKQFTFS GVTIDPVHAV MVTTTVVVVL FSTLVFGFLT KPLIHHLLPQ NDSRRGIDRE SSISKETLPL LSFDESATTN LLRAKDSLSM LLQRPVYTIH
501: SYWRRFDDTY MRPIFCAPTT NEESV

Best Arabidopsis Sequence Match ( AT5G55470.1 )
(BLAST)

001: MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV LFNAVQKIQF
201: ESLTGWTALQ VFGNFLYLFS TSTLLGIGVG LITSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR
301: HVFAMLSFIA ETFIFLYVGT DALDFTKWKT SSLSFGGTLG VSGVITALVL LGRAAFVFPL SVLTNFMNRH TERNESITFK HQVIIWWAGL MRGAVSIALA
401: FKQFTYSGVT LDPVNAAMVT NTTIVVLFTT LVFGFLTKPL VNYLLPQDAS HNTGNRGKRT EPGSPKEDAT LPLLSFDESA STNFNRAKDS ISLLMEQPVY
501: TIHRYWRKFD DTYMRPIFGG PRRENQPEC

Arabidopsis Description

NHX4Sodium/hydrogen exchanger 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S397]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.