CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17324	Canola	plasma membrane	95.65	94.93
AT5G55470.1	Thale cress	plasma membrane	88.66	88.66
Bra009647.1-P	Field mustard	cytosol	11.15	83.1
VIT_19s0090g01480.t01	Wine grape	plasma membrane	68.81	69.87
Solyc10g006080.1.1	Tomato	plasma membrane	67.11	67.62
KRH46278	Soybean	plasma membrane	66.92	66.92
PGSC0003DMT400085382	Potato	plasma membrane	68.24	65.88
GSMUA_Achr5P04100_001	Banana	plasma membrane	60.3	61.35
TraesCS7A01G228400.1	Wheat	plasma membrane	60.3	60.53
TraesCS7D01G226200.1	Wheat	plasma membrane	60.11	60.34
TraesCS7B01G191300.1	Wheat	plasma membrane	59.92	60.15
HORVU7Hr1G046030.1	Barley	plasma membrane	59.92	60.15
KXG19894	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	59.55	59.43
Os06t0318500-00	Rice	plasma membrane	59.74	58.41
Zm00001d045883_P001	Maize	plasma membrane	60.11	58.35
CDY19707	Canola	plasma membrane	54.82	54.61
CDY00002	Canola	plasma membrane	55.2	54.58
CDY50586	Canola	plasma membrane	55.58	54.04
CDY25045	Canola	plasma membrane	55.58	54.04
CDY27804	Canola	plasma membrane	55.77	54.03
CDY41925	Canola	plasma membrane	55.95	53.92
CDY24699	Canola	plasma membrane	54.44	51.61
CDY05257	Canola	plasma membrane	54.25	51.25
CDX80670	Canola	plasma membrane	34.78	46.7
CDY29237	Canola	endoplasmic reticulum, plasma membrane, plastid	7.56	42.55
CDX86176	Canola	golgi, plasma membrane, plastid	11.72	40.79
CDX79331	Canola	plasma membrane	24.39	23.16
CDX67985	Canola	plasma membrane	24.39	23.16
CDX88553	Canola	plasma membrane	23.44	21.27
CDX87370	Canola	plasma membrane	24.57	20.19

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	GO:A0A078I4A5	UniProt:A0A078I4A5	EnsemblPlants:CDY45655	ProteinID:CDY45655
ProteinID:CDY45655.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810
GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628
GO:GO:0009651	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385	GO:GO:0016020	GO:GO:0016021
GO:GO:0035725	GO:GO:0055075	GO:GO:0055085	GO:GO:1902600	EnsemblPlantsGene:GSBRNA2T00082423001	InterPro:IPR038770
InterPro:NHX4	InterPro:Na+/solute_symporter_sf	InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110
PANTHER:PTHR10110:SF101	TMHMM:TMhelix	UniParc:UPI0004EE46F6	SEG:seg	:	:

Description

BnaC09g31970DBnaC09g31970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I4A5]

Coordinates

chrLK032632:-:85165..88207

Molecular Weight (calculated)

58669.0 Da

IEP (calculated)

7.116

GRAVY (calculated)

0.559

Length

529 amino acids

Sequence
(BLAST)

001: MGIGLTEFLS IELATEHPQV IPISVFIVIL CLCLVIGHLL EENRWVNESI TAIAVGAVSG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STTIISFGTW WLFPKLGFKG LTARDYLGET FYCLFIYSIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV
201: LFNAVQKIHF ESINGLTALR VFGNFLYLFS TSTLLGIGVG LVTSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASHV
301: FAMLSFISET FIFLYVGTDA LDFTKWKTSS LSVGGTLEVS GVITTLVLLG RAAFVFPLSV LTNLMNRNTQ RSESLTFKHQ VIICWAGLMR GAVSIALAFK
401: QFTYSGVTTD PLNAAMVTNT IVVVLFTTLV FGFLTKPLVN YLLPHDESSQ NTGNSRCKQS APGSPKEDAT LPLLSFDEST STNLSRAKDS LTLLIEQPVY
501: TIHRYWRKFD DTYMRPVFGG PRPVNQPEC

Best Arabidopsis Sequence Match ( AT5G55470.1 )
(BLAST)

001: MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV LFNAVQKIQF
201: ESLTGWTALQ VFGNFLYLFS TSTLLGIGVG LITSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR
301: HVFAMLSFIA ETFIFLYVGT DALDFTKWKT SSLSFGGTLG VSGVITALVL LGRAAFVFPL SVLTNFMNRH TERNESITFK HQVIIWWAGL MRGAVSIALA
401: FKQFTYSGVT LDPVNAAMVT NTTIVVLFTT LVFGFLTKPL VNYLLPQDAS HNTGNRGKRT EPGSPKEDAT LPLLSFDESA STNFNRAKDS ISLLMEQPVY
501: TIHRYWRKFD DTYMRPIFGG PRRENQPEC

Arabidopsis Description

NHX4Sodium/hydrogen exchanger 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S397]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.