CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, plasma membrane

Predictor Summary:

nucleus 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 2
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, plastid
Any Predictor:	endoplasmic reticulum, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009975.1-P	Field mustard	golgi, plasma membrane, plastid	100.0	61.84
CDX86176	Canola	golgi, plasma membrane, plastid	100.0	61.84
CDY19707	Canola	plasma membrane	81.91	14.5
CDY00002	Canola	plasma membrane	80.85	14.21
CDY25045	Canola	plasma membrane	81.91	14.15
CDY50586	Canola	plasma membrane	80.85	13.97
CDY27804	Canola	plasma membrane	72.34	12.45
CDY41925	Canola	plasma membrane	71.28	12.2
KRH12862	Soybean	golgi, plasma membrane, vacuole	14.89	11.97
CDY24699	Canola	plasma membrane	54.26	9.14
CDY05257	Canola	plasma membrane	54.26	9.11
CDY17324	Canola	plasma membrane	44.68	7.88
CDX80670	Canola	plasma membrane	31.91	7.61
CDY45655	Canola	plasma membrane	42.55	7.56
CDX67985	Canola	plasma membrane	23.4	3.95
CDX79331	Canola	plasma membrane	23.4	3.95
CDX88553	Canola	plasma membrane	24.47	3.95
CDX87370	Canola	plasma membrane	24.47	3.57
Zm00001d041859_P001	Maize	mitochondrion	2.13	1.32

Protein Annotations

MapMan:35.1	GO:A0A078GVS1	UniProt:A0A078GVS1	EnsemblPlants:CDY29237	ProteinID:CDY29237	ProteinID:CDY29237.1
InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810	GO:GO:0006812
GO:GO:0006814	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0015299
GO:GO:0016020	GO:GO:0016021	GO:GO:0055075	GO:GO:1902600	EnsemblPlantsGene:GSBRNA2T00042165001	InterPro:Na/H_exchanger_plant
PANTHER:PTHR10110	PANTHER:PTHR10110:SF117	TMHMM:TMhelix	UniParc:UPI0004EEA5C0	SEG:seg	:

Description

BnaA06g25200DBnaA06g25200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVS1]

Coordinates

chrLK032233:+:430538..430890

Molecular Weight (calculated)

10424.8 Da

IEP (calculated)

10.953

GRAVY (calculated)

0.150

Length

94 amino acids

Sequence
(BLAST)

1: MDALDIDKWR IVRDSLGTSF AVSSILIALL MLGRAAFVFP LSFLPNLAKK NQSEKINFKM QLYSFMRPVF GGRGFGPFVS SSPTERDPPG LRGV

Best Arabidopsis Sequence Match ( AT5G27150.1 )
(BLAST)

001: MLDSLVSKLP SLSTSDHASV VALNLFVALL CACIVLGHLL EENRWMNESI TALLIGLGTG VTILLISKGK SSHLLVFSED LFFIYLLPPI IFNAGFQVKK
101: KQFFRNFVTI MLFGAVGTII SCTIISLGVT QFFKKLDIGT FDLGDYLAIG AIFAATDSVC TLQVLNQDET PLLYSLVFGE GVVNDATSVV VFNAIQSFDL
201: THLNHEAAFH LLGNFLYLFL LSTLLGAATG LISAYVIKKL YFGRHSTDRE VALMMLMAYL SYMLAELFDL SGILTVFFCG IVMSHYTWHN VTESSRITTK
301: HTFATLSFLA ETFIFLYVGM DALDIDKWRS VSDTPGTSIA VSSILMGLVM VGRAAFVFPL SFLSNLAKKN QSEKINFNMQ VVIWWSGLMR GAVSMALAYN
401: KFTRAGHTDV RGNAIMITST ITVCLFSTVV FGMLTKPLIS YLLPHQNATT SMLSDDNTPK SIHIPLLDQD SFIEPSGNHN VPRPDSIRGF LTRPTRTVHY
501: YWRQFDDSFM RPVFGGRGFV PFVPGSPTER NPPDLSKA

Arabidopsis Description

NHX1Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:Q0WVZ5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.