CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039469.1-P	Field mustard	plasma membrane	99.82	99.82
CDY41925	Canola	plasma membrane	97.8	97.27
AT3G05030.4	Thale cress	plasma membrane	91.94	91.94
CDY19707	Canola	plasma membrane	85.16	87.57
CDY00002	Canola	plasma membrane	85.35	87.1
CDY25045	Canola	plasma membrane	86.26	86.58
CDY50586	Canola	plasma membrane	85.9	86.21
VIT_14s0030g00710.t01	Wine grape	plasma membrane	76.01	76.99
PGSC0003DMT400057913	Potato	plasma membrane	75.27	76.68
Solyc01g098190.2.1	Tomato	plasma membrane	74.73	76.12
KRG92790	Soybean	plasma membrane	75.27	75.27
KRH34011	Soybean	plasma membrane	75.09	75.09
KRH68649	Soybean	plasma membrane	73.08	72.94
CDY29237	Canola	endoplasmic reticulum, plasma membrane, plastid	12.45	72.34
KRG96912	Soybean	plasma membrane	71.98	71.85
CDX80670	Canola	plasma membrane	50.55	70.05
CDY24699	Canola	plasma membrane	69.96	68.46
CDY05257	Canola	plasma membrane	69.96	68.21
CDX86176	Canola	golgi, plasma membrane, plastid	17.77	63.82
CDY17324	Canola	plasma membrane	56.04	57.41
CDY45655	Canola	plasma membrane	54.03	55.77
Zm00001d041859_P001	Maize	mitochondrion	12.82	46.05
CDX67985	Canola	plasma membrane	24.91	24.42
CDX79331	Canola	plasma membrane	24.73	24.24
CDX88553	Canola	plasma membrane	24.18	22.64
CDX87370	Canola	plasma membrane	24.91	21.12

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	GO:A0A078GRG5	UniProt:A0A078GRG5	EnsemblPlants:CDY27804	ProteinID:CDY27804
ProteinID:CDY27804.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886
GO:GO:0006810	GO:GO:0006811	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950
GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385
GO:GO:0016020	GO:GO:0016021	GO:GO:0035725	GO:GO:0055075	GO:GO:0055085	GO:GO:1902600
EnsemblPlantsGene:GSBRNA2T00038611001	InterPro:IPR038770	InterPro:Na+/solute_symporter_sf	InterPro:Na/H_exchanger_plant	InterPro:NaH_exchanger	PFAM:PF00999
PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF117	TIGRFAMs:TIGR00840	TMHMM:TMhelix	UniParc:UPI0004EEC8EB
SEG:seg	:	:	:	:	:

Description

BnaA05g32130DSodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A078GRG5]

Coordinates

chrLK032209:+:512138..516163

Molecular Weight (calculated)

60600.4 Da

IEP (calculated)

7.550

GRAVY (calculated)

0.471

Length

546 amino acids

Sequence
(BLAST)

001: MLASLYTSLT TKMLSVSTSD HASVVSLNLF VALLCACIVV GHLLEEHRWI NESITALLIG LGTGVVILLM SRGKSSHLLV FSEDLFFIYL LPPIIFNAGF
101: QVKKKQFFRN FVTIMAFGAI GTIISCTVIS LGAIHFFKKL DIATFDLGDI LAIGAIFAAT DSVCTLQVLN QDETPLLYSL VFGEGVVNDA TSVVLFNAIQ
201: SFDLTHLNHE AAFHFLGNFL YLFLLSTVLG VATGLVSAYV IKKLYFGRHS TDREVALMML MAYLSYMLAE LFALSGILTV FFCGIVMSHY TWHNVTESSR
301: VTTKHTFATL SFLAETFIFL YVGMDALDIE KWRFVSDSPG TSVAVSSILM GLVMLGRAAF VFPLSFLSNL SKKNQSEKID IKQQVVIWWA GLMRGAVSMA
401: LAYNKFTRSG HTELRGNAIM ITSTITVCLF STMVFGMLTK PLIRHLMPHQ STTTSMLSDD NTPKSLHMPL LDGEQQDSFV EFSGSHHDVP RPDSLRGFLM
501: RPARTVHHYW RQFDDAFMRP VFGGRGFVPF VPGSPIERST HDLSKP

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.