CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	golgi, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G79610.1	Thale cress	plasma membrane	84.22	91.78
CDX67985	Canola	plasma membrane	84.39	88.33
CDX79331	Canola	plasma membrane	84.39	88.33
CDX87370	Canola	plasma membrane	94.17	85.25
Solyc04g056600.2.1	Tomato	plasma membrane	69.81	76.65
KRH11690	Soybean	plasma membrane	68.95	75.28
KRH36691	Soybean	plasma membrane	68.78	75.09
KRH51250	Soybean	plasma membrane	67.75	74.95
Zm00001d019978_P001	Maize	plasma membrane	68.44	74.44
KXG35307	Sorghum	plastid	68.44	74.44
Os09t0286400-01	Rice	plasma membrane	67.58	73.64
TraesCS5B01G173800.1	Wheat	plasma membrane	67.24	73.41
TraesCS5A01G176100.3	Wheat	plasma membrane	67.24	73.27
TraesCS5D01G180800.1	Wheat	plasma membrane	67.07	73.22
VIT_15s0024g00280.t01	Wine grape	golgi, plasma membrane	38.42	71.11
VIT_15s0024g00260.t01	Wine grape	plasma membrane	28.82	69.42
TraesCS5B01G259100.2	Wheat	plasma membrane	61.58	68.77
GSMUA_Achr2P05520_001	Banana	plasma membrane	28.99	68.42
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	58.49	67.66
TraesCS5A01G260700.1	Wheat	plasma membrane	61.58	67.48
TraesCS5D01G268200.1	Wheat	plasma membrane	61.58	67.48
KXG35876	Sorghum	plasma membrane	61.06	65.93
HORVU5Hr1G053720.2	Barley	plastid	67.07	65.17
TraesCS7B01G149100.1	Wheat	plasma membrane	59.18	64.25
TraesCS7A01G242300.1	Wheat	plasma membrane	59.69	64.21
TraesCS7D01G241200.1	Wheat	plasma membrane	59.69	64.09
HORVU7Hr1G049400.10	Barley	endoplasmic reticulum, plasma membrane	58.66	63.93
HORVU5Hr1G072440.26	Barley	golgi, mitochondrion, nucleus, plastid	54.37	58.38
Os09t0482620-00	Rice	golgi, mitochondrion, peroxisome	23.16	51.33
Zm00001d020892_P003	Maize	plasma membrane	40.48	47.58
CDY19707	Canola	plasma membrane	23.33	25.61
CDY00002	Canola	plasma membrane	23.33	25.42
CDY50586	Canola	plasma membrane	22.98	24.63
CDY25045	Canola	plasma membrane	22.98	24.63
CDY29237	Canola	endoplasmic reticulum, plasma membrane, plastid	3.95	24.47
CDY17324	Canola	plasma membrane	22.13	24.2
CDY27804	Canola	plasma membrane	22.64	24.18
CDY41925	Canola	plasma membrane	22.64	24.04
CDX86176	Canola	golgi, plasma membrane, plastid	6.17	23.68
CDY45655	Canola	plasma membrane	21.27	23.44
CDY24699	Canola	plasma membrane	21.27	22.22
CDY05257	Canola	plasma membrane	21.27	22.14
CDX80670	Canola	plasma membrane	14.07	20.81

Protein Annotations

MapMan:24.2.8.1.1	GO:A0A078DMX4	EnsemblPlants:CDX88553	ProteinID:CDX88553	ProteinID:CDX88553.1	InterPro:Cation/H_exchanger
InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006811
GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0008150	GO:GO:0015297	GO:GO:0015299
GO:GO:0015385	GO:GO:0016020	GO:GO:0016021	GO:GO:0035725	GO:GO:0055085	GO:GO:1902600
EnsemblPlantsGene:GSBRNA2T00148115001	InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF111
TMHMM:TMhelix	UniParc:UPI0004EDB68D	SEG:seg	:	:	:

Description

BnaC06g39970D

Coordinates

chrLK031855:-:1616095..1620122

Molecular Weight (calculated)

65521.4 Da

IEP (calculated)

6.928

GRAVY (calculated)

0.316

Length

583 amino acids

Sequence
(BLAST)

001: MPEISPAIHD PQGQEKQQQA AGVGILLQIM MLVLSFVLGH VLRRHKFYYL PEASASLLIG LIVGGLANVS NTETSIRTWF NFHDEFFFLF FLDVLVCTQS
101: GFSLQPKPFF SNFGAIVTFS VLGTFVASIV TGVLVYLGGV MFLMYRLPFV ECLMFGSLIS ATDPVTVLSI FQELGSDVNL YALVFGESVL NDAMAISLYR
201: TMSLVRSHSA GQNFFMVIIR FLETFVGSMS AGLLLLSASS FFVYIFHLCF SNLRKAIYKY QTKYYLKHLN TCFTNVLNAK HLFKYAGLDV DNLQNLECCL
301: FVLFPYFSYM LAEGLSLSGI VSILFTGIVM KHYTYSNLST NSQRFVSAFF HLISSLAETF VFIYMGFDIA MEKHSWSHVG FIFFSILFIV IARAANVFGC
401: GYLVNLARPA HRKIPMTHQK ALWYSGLRGA MAFALALQSV HELPDGHGQT IFTATTAIVV VTVLLIGGST GTMLEALEVV GDSRDTSLGD GFEVVNNRYM
501: TRFDDEGSPS ESGFRTKLRE FHKSAKSFSE LDRNYLTPFF TSNNGDYDED DDINNDQHHY LKRSEERIPF TRRGNFNNRG LNF

Best Arabidopsis Sequence Match ( AT1G79610.1 )
(BLAST)

001: MSSELQISPA IHDPQGQEKQ QQAAGVGILL QIMMLVLSFV LGHVLRRHKF YYLPEASASL LIGLIVGGLA NISNTETSIR TWFNFHDEFF FLFLLPPIIF
101: QSGFSLQPKP FFSNFGAIVT FSVLGTFVAS MVTGLLVYLG GVMFLMYRLP FVECLMFGSL ISATDPVTVL SIFQELGSDV NLYALVFGES VLNDAMAISL
201: YRTMSLVRSH SSGQNFFMVI VRFLETFVGS MSAGVGVGFT SALLFKYAGL DVDNLQNLEC CLFVLFPYFS YMLAEGLSLS GIVSILFTGI VMKHYTYSNL
301: SANSQRFVSA FFHLISSLAE TFVFIYMGFD IAMEKHSWSH LGFIFFSILF IVIARAANVF GCGYLVNLAR PAHRKIPMTH QKALWYSGLR GAMAFALALQ
401: SVHDLPEGHG QTIFTATTAI VVLTVLLIGG STGTMLEALE VVGDSHDTSL GDGFEVVNSR YMTSYDDEDT PPGSGFRTKL REFHKSAASF TELDRNYLTP
501: FFTSNNGDYD DEGNMEQHHE ERIPFTRRGN LNNRG

Arabidopsis Description

NHX6Sodium/hydrogen exchanger 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.