CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
mitochondrion 1
plasma membrane 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020599.1-P	Field mustard	plasma membrane	93.93	99.61
CDY25045	Canola	plasma membrane	99.45	99.45
CDY19707	Canola	plasma membrane	94.67	96.99
CDY00002	Canola	plasma membrane	94.49	96.07
AT5G27150.1	Thale cress	plasma membrane	92.1	93.12
CDY27804	Canola	plasma membrane	86.21	85.9
CDY41925	Canola	plasma membrane	86.21	85.43
CDY29237	Canola	endoplasmic reticulum, plasma membrane, plastid	13.97	80.85
VIT_14s0030g00710.t01	Wine grape	plasma membrane	76.84	77.55
KRH34011	Soybean	plasma membrane	76.65	76.37
KRG92790	Soybean	plasma membrane	76.47	76.19
Solyc01g098190.2.1	Tomato	plasma membrane	74.45	75.56
PGSC0003DMT400057913	Potato	plasma membrane	74.26	75.37
CDX80670	Canola	plasma membrane	53.68	74.11
KRH68649	Soybean	plasma membrane	74.45	74.04
KRG96912	Soybean	plasma membrane	73.53	73.13
CDX86176	Canola	golgi, plasma membrane, plastid	19.3	69.08
CDY24699	Canola	plasma membrane	69.12	67.38
CDY05257	Canola	plasma membrane	69.12	67.14
CDY17324	Canola	plasma membrane	56.07	57.22
CDY45655	Canola	plasma membrane	54.04	55.58
Zm00001d041859_P001	Maize	mitochondrion	12.32	44.08
CDX79331	Canola	plasma membrane	25.74	25.13
CDX67985	Canola	plasma membrane	25.74	25.13
CDX88553	Canola	plasma membrane	24.63	22.98
CDX87370	Canola	plasma membrane	25.37	21.43

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	GO:A0A078IKR6	UniProt:A0A078IKR6	EnsemblPlants:CDY50586	ProteinID:CDY50586
ProteinID:CDY50586.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886
GO:GO:0006810	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950	GO:GO:0008150
GO:GO:0009628	GO:GO:0009651	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385	GO:GO:0016020
GO:GO:0016021	GO:GO:0035725	GO:GO:0055075	GO:GO:0055085	GO:GO:1902600	EnsemblPlantsGene:GSBRNA2T00097037001
InterPro:IPR038770	InterPro:Na+/solute_symporter_sf	InterPro:Na/H_exchanger_plant	InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084
PANTHER:PTHR10110	PANTHER:PTHR10110:SF117	TMHMM:TMhelix	UniParc:UPI0004EEF26C	SEG:seg	:

Description

BnaC02g39600DBnaC02g39600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IKR6]

Coordinates

chrLK032924:+:89274..93520

Molecular Weight (calculated)

60391.1 Da

IEP (calculated)

7.622

GRAVY (calculated)

0.488

Length

544 amino acids

Sequence
(BLAST)

001: MTMMASFLDS FVSKMPSLST SDHASVVSLN LFVALLCACI VLGHLLEENR WMNESITALM IGLATGVVIL LISNGKSSRL LVFSEDLFFI YLLPPIIFNA
101: GFQVKKKQFF RNFVTIMLFG AIGTVVSCTV ITLGVTQFFK KLDIGTFDLG DYLAIGAIFA ATDSVCTLQV LNQDETPLLY SLVFGEGVVN DATSVVVFNA
201: IQSFDLTHLN HEAAFQLLGN FMYLFLLSTL LGVATGLISA YVIKKLYFGR HSTDREVALM MLMAYLSYML AELFDLSGIL TVFFCGIVMS HYTWHNVTES
301: SRITTKHTFA TLSFLAETFI FLYVGMDALD IDKWRSVSDS PGTSVAVSSI LIGLLMLGRA AFVFPLSFLS NLVKKNESEK INFKMQVVIW WSGLMRGAVS
401: MALAYNKFTS AGHTDLRGNA IMITSTITVC LFSTVVFGML TKPLIRFLLP HQKATTSFLS DGNTPKSIQI PLLDQDSFIE FTGNHNVPRP DSIRGFLTRP
501: TRTVHYYWRK FDDSFMRPVF GGRGFVPFVP GSPTERDPPD LSRA

Best Arabidopsis Sequence Match ( AT5G27150.1 )
(BLAST)

001: MLDSLVSKLP SLSTSDHASV VALNLFVALL CACIVLGHLL EENRWMNESI TALLIGLGTG VTILLISKGK SSHLLVFSED LFFIYLLPPI IFNAGFQVKK
101: KQFFRNFVTI MLFGAVGTII SCTIISLGVT QFFKKLDIGT FDLGDYLAIG AIFAATDSVC TLQVLNQDET PLLYSLVFGE GVVNDATSVV VFNAIQSFDL
201: THLNHEAAFH LLGNFLYLFL LSTLLGAATG LISAYVIKKL YFGRHSTDRE VALMMLMAYL SYMLAELFDL SGILTVFFCG IVMSHYTWHN VTESSRITTK
301: HTFATLSFLA ETFIFLYVGM DALDIDKWRS VSDTPGTSIA VSSILMGLVM VGRAAFVFPL SFLSNLAKKN QSEKINFNMQ VVIWWSGLMR GAVSMALAYN
401: KFTRAGHTDV RGNAIMITST ITVCLFSTVV FGMLTKPLIS YLLPHQNATT SMLSDDNTPK SIHIPLLDQD SFIEPSGNHN VPRPDSIRGF LTRPTRTVHY
501: YWRQFDDSFM RPVFGGRGFV PFVPGSPTER NPPDLSKA

Arabidopsis Description

NHX1Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:Q0WVZ5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.