Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY19707 | Canola | plasma membrane | 73.6 | 54.61 |
| CDY00002 | Canola | plasma membrane | 73.6 | 54.21 |
| CDY25045 | Canola | plasma membrane | 74.37 | 53.86 |
| CDY50586 | Canola | plasma membrane | 74.11 | 53.68 |
| AT5G27150.1 | Thale cress | plasma membrane | 73.1 | 53.53 |
| CDY27804 | Canola | plasma membrane | 70.05 | 50.55 |
| CDY41925 | Canola | plasma membrane | 69.29 | 49.73 |
| KRH34011 | Soybean | plasma membrane | 62.69 | 45.24 |
| KRG92790 | Soybean | plasma membrane | 62.69 | 45.24 |
| Solyc01g098190.2.1 | Tomato | plasma membrane | 61.42 | 45.15 |
| VIT_14s0030g00710.t01 | Wine grape | plasma membrane | 61.68 | 45.08 |
| PGSC0003DMT400057913 | Potato | plasma membrane | 60.91 | 44.78 |
| KRH68649 | Soybean | plasma membrane | 61.68 | 44.42 |
| KRG96912 | Soybean | plasma membrane | 61.17 | 44.06 |
| CDY24699 | Canola | plasma membrane | 55.08 | 38.89 |
| CDY05257 | Canola | plasma membrane | 55.08 | 38.75 |
| CDY17324 | Canola | plasma membrane | 48.98 | 36.21 |
| CDY45655 | Canola | plasma membrane | 46.7 | 34.78 |
| Zm00001d041859_P001 | Maize | mitochondrion | 13.2 | 34.21 |
| CDY29237 | Canola | endoplasmic reticulum, plasma membrane, plastid | 7.61 | 31.91 |
| CDX86176 | Canola | golgi, plasma membrane, plastid | 10.41 | 26.97 |
| CDX79331 | Canola | plasma membrane | 20.56 | 14.54 |
| CDX67985 | Canola | plasma membrane | 20.56 | 14.54 |
| CDX88553 | Canola | plasma membrane | 20.81 | 14.07 |
| CDX87370 | Canola | plasma membrane | 21.07 | 12.89 |
Protein Annotations
| MapMan:24.2.8.1.1 | GO:A0A078CV20 | EnsemblPlants:CDX80670 | ProteinID:CDX80670 | ProteinID:CDX80670.1 | InterPro:Cation/H_exchanger |
| InterPro:Cation/H_exchanger_CPA1 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006812 |
| GO:GO:0006814 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0015299 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055075 | GO:GO:0055085 | EnsemblPlantsGene:GSBRNA2T00133819001 | InterPro:Na/H_exchanger_plant |
| PFAM:PF00999 | PANTHER:PTHR10110 | PANTHER:PTHR10110:SF117 | TMHMM:TMhelix | UniParc:UPI0004EDBA75 | SEG:seg |
Description
BnaC07g27740D
Coordinates
chrLK031821:-:2003329..2006405
Molecular Weight (calculated)
44071.6 Da
IEP (calculated)
6.334
GRAVY (calculated)
0.422
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKYFSARKV YCYSCCLFQV SSKKEAVFRN IVTIMLFGAI GTAISRTVIT LGTYLDIGIF DLGDYLAIGA IFAATDSVCT LQVLNQDETP LLYSLVFGGV
101: VNDATSVVVF NVIQSFDFTN LNHGLAFQLV GNFSYLFLLS TLLGVAVNIY SYFLYICFPI CHSTDREVAL MMLMTYLSYM LAELFDLSGI LTVFFCGIVM
201: SHYTWHNVTE STRITTKHTF WNIVISCGDI YFLVVIWWSG LIRGAVLMAL AYNKFTMAGH TDLHEHAIMI TSTITVCLFS TMVFGMLTKP LIRYLFPHQQ
301: GPTSMLSDDN NNIPKSIQVP LLDQDSSIEE VAGNENLPRP DSIRGFLTWP TKTVHYYWRQ FDDSFMRPVF GGRGFGPFVS SSPTERGPPG LSGA
101: VNDATSVVVF NVIQSFDFTN LNHGLAFQLV GNFSYLFLLS TLLGVAVNIY SYFLYICFPI CHSTDREVAL MMLMTYLSYM LAELFDLSGI LTVFFCGIVM
201: SHYTWHNVTE STRITTKHTF WNIVISCGDI YFLVVIWWSG LIRGAVLMAL AYNKFTMAGH TDLHEHAIMI TSTITVCLFS TMVFGMLTKP LIRYLFPHQQ
301: GPTSMLSDDN NNIPKSIQVP LLDQDSSIEE VAGNENLPRP DSIRGFLTWP TKTVHYYWRQ FDDSFMRPVF GGRGFGPFVS SSPTERGPPG LSGA
001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP
Arabidopsis Description
NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.