CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 5
vacuole 3
extracellular 2
endoplasmic reticulum 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68649	Soybean	plasma membrane	95.43	95.43
KRG92790	Soybean	plasma membrane	80.62	80.77
KRH34011	Soybean	plasma membrane	80.07	80.22
VIT_14s0030g00710.t01	Wine grape	plasma membrane	76.05	77.18
Bra020599.1-P	Field mustard	plasma membrane	70.38	75.05
CDY19707	Canola	plasma membrane	72.76	74.95
CDY00002	Canola	plasma membrane	72.76	74.39
AT5G27150.1	Thale cress	plasma membrane	73.13	74.35
CDY25045	Canola	plasma membrane	73.31	73.71
Bra036110.1-P	Field mustard	plasma membrane	73.13	73.66
CDY50586	Canola	plasma membrane	73.13	73.53
Solyc01g098190.2.1	Tomato	plasma membrane	72.03	73.51
PGSC0003DMT400057913	Potato	plasma membrane	72.03	73.51
AT3G05030.4	Thale cress	plasma membrane	72.94	73.08
Bra039469.1-P	Field mustard	plasma membrane	72.03	72.16
CDY27804	Canola	plasma membrane	71.85	71.98
KRH02192	Soybean	plasma membrane	70.2	71.64
CDY41925	Canola	plasma membrane	71.85	71.58
KRH12862	Soybean	golgi, plasma membrane, vacuole	14.44	67.52
CDX80670	Canola	plasma membrane	44.06	61.17
KRH50930	Soybean	mitochondrion	69.47	60.32
KRH46278	Soybean	plasma membrane	55.94	57.84
Zm00001d041859_P001	Maize	mitochondrion	13.16	47.37
KRH11690	Soybean	plasma membrane	26.14	26.78
KRH36691	Soybean	plasma membrane	25.96	26.59
KRH51250	Soybean	plasma membrane	25.41	26.38

Protein Annotations

Gene3D:1.20.1530.20	EntrezGene:100787925	MapMan:24.2.8.1.1	EMBL:ACUP02012169	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1
EnsemblPlantsGene:GLYMA_19G240500	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810	GO:GO:0006812
GO:GO:0006814	GO:GO:0006885	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651
GO:GO:0009987	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385	GO:GO:0015386	GO:GO:0016020
GO:GO:0016021	GO:GO:0019725	GO:GO:0051453	GO:GO:0055075	GO:GO:0055085	GO:GO:0071805
GO:GO:0090333	GO:GO:0098719	GO:GO:1902600	UniProt:I1NC48	InterPro:IPR038770	EnsemblPlants:KRG96912
ProteinID:KRG96912	ProteinID:KRG96912.1	InterPro:Na+/solute_symporter_sf	InterPro:Na/H_exchanger_plant	InterPro:NaH_exchanger	PFAM:PF00999
PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF117	TMHMM:TMhelix	UniParc:UPI000233EA3A	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:48831321..48835504

Molecular Weight (calculated)

60743.8 Da

IEP (calculated)

9.080

GRAVY (calculated)

0.474

Length

547 amino acids

Sequence
(BLAST)

001: MGGELSYVLL KTQMLTSDHA SVVSMNIFVA LLCACIVIGH LLEENRWVNE SITALLIGIC TGIVILLLSR GKSSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFVNFI TITLFGVVGT LISCSIITFG VTQIFKRMGF GKSLDMGDYL AIGAIFAATD SVCTLQVLNQ DETPLLYSLV FGEGVVNDAT SVVLFNAIKS
201: FDLNKIDPRI GLHFIGNFLY LFTASTLLGV LAGLLSAYII KTLYIGRHST DREVALMMLM AYLSYILAEL WYLSGILTVF FCGIVMSHYT WHNVTESSRI
301: TTKHAFATLS FVLETFIFLY VGMDALDIEK WRFVSDRPKT SVAVSSVLLG LVLAGRAAFV FPLSFLSNLT KKTQSEKISF REQVIIWWAG LMRGAVSMAL
401: AYNQFTLSGH TEQRTNAIMI TSTITVVLVS TMVFGLMTKP LIRFLLPVNP LPKRKNSMAN IDSSNNSPKS ITVPFLGGSQ DSENEFDGSE IHRPSSIRAL
501: LTTPTHTVHQ LWRKFDNSFM RPVFGGRGFV PVAPNSPTAR NINQQWH

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.