Factsheet for PGSC0003DMT400057913

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
endoplasmic reticulum 3
vacuole 3
extracellular 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g098190.2.1	Tomato	plasma membrane	96.83	96.83
VIT_14s0030g00710.t01	Wine grape	plasma membrane	77.8	77.37
PGSC0003DMT400027658	Potato	plasma membrane	77.24	77.09
KRH34011	Soybean	plasma membrane	77.24	75.82
AT5G27150.1	Thale cress	plasma membrane	75.75	75.46
Bra039469.1-P	Field mustard	plasma membrane	76.87	75.46
AT3G05030.4	Thale cress	plasma membrane	76.87	75.46
KRG92790	Soybean	plasma membrane	76.87	75.46
CDY19707	Canola	plasma membrane	74.63	75.33
CDY27804	Canola	plasma membrane	76.68	75.27
Bra020599.1-P	Field mustard	plasma membrane	72.01	75.24
CDY00002	Canola	plasma membrane	74.81	74.95
Bra036110.1-P	Field mustard	plasma membrane	75.56	74.59
CDY50586	Canola	plasma membrane	75.37	74.26
CDY25045	Canola	plasma membrane	75.37	74.26
CDY41925	Canola	plasma membrane	75.93	74.13
KRG96912	Soybean	plasma membrane	73.51	72.03
KRH68649	Soybean	plasma membrane	73.51	72.03
PGSC0003DMT400056555	Potato	plasma membrane	32.46	69.05
PGSC0003DMT400056556	Potato	golgi, plasma membrane	37.5	65.69
CDX80670	Canola	plasma membrane	44.78	60.91
PGSC0003DMT400085382	Potato	plasma membrane	57.28	56.02
Zm00001d041859_P001	Maize	mitochondrion	12.87	45.39

Protein Annotations

Gene3D:1.20.1530.20	EntrezGene:102583073	MapMan:24.2.8.1.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005886	GO:GO:0006810	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885
GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0015297	GO:GO:0015299
GO:GO:0015385	GO:GO:0016020	GO:GO:0016021	GO:GO:0035725	GO:GO:0055075	GO:GO:0055085
GO:GO:1902600	InterPro:IPR038770	UniProt:M1C1W1	InterPro:Na+/solute_symporter_sf	InterPro:Na/H_exchanger_plant	InterPro:NaH_exchanger
PFAM:PF00999	EnsemblPlantsGene:PGSC0003DMG400022490	PGSC:PGSC0003DMG400022490	EnsemblPlants:PGSC0003DMT400057913	PRINTS:PR01084	PANTHER:PTHR10110
PANTHER:PTHR10110:SF117	TMHMM:TMhelix	UniParc:UPI000295E6C6	RefSeq:XP_015164436.1	RefSeq:XP_015164437.1	RefSeq:XP_015164438.1
RefSeq:XP_015164439.1	SEG:seg	:	:	:	:

Description

Sodium/hydrogen exchanger [Source:PGSC_GENE;Acc:PGSC0003DMG400022490]

Coordinates

chr1:+:75833734..75839851

Molecular Weight (calculated)

58818.6 Da

IEP (calculated)

7.954

GRAVY (calculated)

0.577

Length

536 amino acids

Sequence
(BLAST)

001: MASVLASLFP KLGSLGTSDH ASVVSINLFV ALLCACIIIG HLLEENRWIN ESITALIIGL GTGVVILLVS GGKSSHLLVF SEDLFFIYVL PPIIFNAGFQ
101: VKKKQFFVNF ITIMMFGAIG TLVSCAIISL GAIQTFKKLD IEFLDIGDYL AIGAIFAATD SVCTLQVLHQ DETPLLYSLV FGEGVVNDAT SVVLFNAIQN
201: FDLTSVNLSI ALSFLGNFFY LFLASTLLGA GTGLLSAYII KKLYFGRHST DREVALMMLM AYLSYMLAEL FYLSGILTVF FCGIVMSHYT WHNVTESSRV
301: TTRHAFATLS FLAETFLFLY VGMDALDIEK WKFVGDRPGL SISVSSILMG LILLGRAAFV FPLSFFSNLM KKSSEQKITF RQQVIIWWAG LMRGAVSMAL
401: AYNKFTRGGH TQLQDNAIMI TSTITIVLFS TMVFGLMTKP LISLLLPPQR QLSTVSSGAN TPKSLTAPLL GSREDSEVDL NVPDLPHPPS LRMLLTAPSH
501: KVHRYWRKFD DAFMRPMFGG RGFAPPAPGS PTEQGP

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.