Factsheet for VIT_14s0030g00710.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 5
vacuole 3
extracellular 2
endoplasmic reticulum 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020599.1-P	Field mustard	plasma membrane	74.95	78.75
CDY19707	Canola	plasma membrane	77.18	78.34
KRH34011	Soybean	plasma membrane	79.22	78.21
KRG92790	Soybean	plasma membrane	79.22	78.21
VIT_05s0020g01960.t01	Wine grape	plasma membrane	78.29	78.0
CDY00002	Canola	plasma membrane	77.37	77.94
PGSC0003DMT400057913	Potato	plasma membrane	77.37	77.8
CDY25045	Canola	plasma membrane	77.92	77.21
AT3G05030.4	Thale cress	plasma membrane	78.11	77.11
Solyc01g098190.2.1	Tomato	plasma membrane	76.62	77.05
Bra036110.1-P	Field mustard	plasma membrane	77.55	76.98
AT5G27150.1	Thale cress	plasma membrane	76.81	76.95
CDY50586	Canola	plasma membrane	77.55	76.84
Bra039469.1-P	Field mustard	plasma membrane	77.18	76.19
VIT_07s0104g01280.t01	Wine grape	plasma membrane	70.5	76.15
KRG96912	Soybean	plasma membrane	77.18	76.05
KRH68649	Soybean	plasma membrane	77.18	76.05
CDY27804	Canola	plasma membrane	76.99	76.01
CDY41925	Canola	plasma membrane	76.81	75.41
VIT_14s0128g00020.t01	Wine grape	plasma membrane	62.89	62.66
CDX80670	Canola	plasma membrane	45.08	61.68
VIT_19s0090g01480.t01	Wine grape	plasma membrane	58.44	60.46
Zm00001d041859_P001	Maize	mitochondrion	13.17	46.71
VIT_15s0024g00280.t01	Wine grape	golgi, plasma membrane	14.29	24.44
VIT_15s0024g00260.t01	Wine grape	plasma membrane	10.39	23.14

Protein Annotations

Gene3D:1.20.1530.20	EntrezGene:100259022	wikigene:100259022	MapMan:24.2.8.1.1	EMBL:AM445931	ProteinID:CAN63119
ProteinID:CAN63119.1	ProteinID:CCB58149	ProteinID:CCB58149.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	UniProt:F6HTY8
EMBL:FN596249	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810	GO:GO:0006811
GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385	GO:GO:0015386
GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0035725	GO:GO:0051453	GO:GO:0055075
GO:GO:0055085	GO:GO:0071805	GO:GO:0090333	GO:GO:0098719	GO:GO:1902600	InterPro:IPR038770
EntrezGene:LOC100259022	wikigene:LOC100259022	InterPro:Na+/solute_symporter_sf	InterPro:Na/H_exchanger_plant	InterPro:NaH_exchanger	PFAM:PF00999
PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF117	TIGR:TC53334	TIGR:TC64039	TIGRFAMs:TIGR00840
TMHMM:TMhelix	UniParc:UPI000210A17E	ArrayExpress:VIT_14s0030g00710	EnsemblPlantsGene:VIT_14s0030g00710	EnsemblPlants:VIT_14s0030g00710.t01	RefSeq:XP_002266345
RefSeq:XP_002266345.2	SEG:seg	:	:	:	:

Description

Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:F6HTY8]

Coordinates

chr14:+:4886251..4918649

Molecular Weight (calculated)

59376.8 Da

IEP (calculated)

8.736

GRAVY (calculated)

0.555

Length

539 amino acids

Sequence
(BLAST)

001: MASQFGSMLT RLGNLSTSDH ASVVSINLFV ALLCGCIVIG HLLEENRWVN ESITALVIGV CTGVVILLTS GGRSSHLLVF SEDLFFIYLL PPIIFNAGFQ
101: VKKKQFFRNF ITIMLFGAVG TLISCGIITS GVMQFFSKLD IGSFDIGDYL AIGAIFSATD SVCTLQVLNQ DETPLLYSLV FGEGVVNDAA SVVLFNAIQS
201: FDLTHTNLRI ALQFIGNFFY LFFTSTMLGV VAGLLSAYII KTLYFGRHST DREVALMMLM AYLSYILAEL FYLSGILTVF FCGIVMSHYT WHNVTESSRV
301: TTKHAFATLS FVAEIFIFLY VGMDALDIEK WRFVSKTPGT SVAVSSILIG LVLVGRAAFV FPLSFLSNLA KKNPTEKITF RQQVIIWWAG LMRGAVSVAL
401: AYNQFARSGH TQLRSNAIMI TSTITVVLFS TVVFGLMTQP LIRFLLPHSK NTTSMVYSDS STPKSFAVPL LESAQNSDAD MGGHGFPRPS SLRMLLTTPS
501: RSVHHYWRKF DDAIMRPMFG GRGFVPFVPG SPTERSAPQ

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.