CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 5
vacuole 3
extracellular 2
endoplasmic reticulum 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34011	Soybean	plasma membrane	97.99	97.99
KRG96912	Soybean	plasma membrane	80.77	80.62
KRH68649	Soybean	plasma membrane	79.67	79.52
VIT_14s0030g00710.t01	Wine grape	plasma membrane	78.21	79.22
Bra020599.1-P	Field mustard	plasma membrane	73.08	77.78
CDY19707	Canola	plasma membrane	75.27	77.4
Solyc01g098190.2.1	Tomato	plasma membrane	75.64	77.05
CDY00002	Canola	plasma membrane	75.46	77.01
AT3G05030.4	Thale cress	plasma membrane	76.92	76.92
PGSC0003DMT400057913	Potato	plasma membrane	75.46	76.87
CDY25045	Canola	plasma membrane	76.56	76.84
AT5G27150.1	Thale cress	plasma membrane	75.64	76.77
CDY50586	Canola	plasma membrane	76.19	76.47
KRH02192	Soybean	plasma membrane	74.91	76.31
Bra036110.1-P	Field mustard	plasma membrane	75.82	76.24
CDY27804	Canola	plasma membrane	75.27	75.27
Bra039469.1-P	Field mustard	plasma membrane	75.27	75.27
CDY41925	Canola	plasma membrane	75.27	74.86
KRH12862	Soybean	golgi, plasma membrane, vacuole	14.84	69.23
KRH50930	Soybean	mitochondrion	74.73	64.76
CDX80670	Canola	plasma membrane	45.24	62.69
KRH46278	Soybean	plasma membrane	58.79	60.68
Zm00001d041859_P001	Maize	mitochondrion	13.37	48.03
KRH11690	Soybean	plasma membrane	26.01	26.59
KRH36691	Soybean	plasma membrane	25.82	26.4
KRH51250	Soybean	plasma membrane	24.91	25.81

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	EntrezGene:732573	EMBL:ACUP02012767	EMBL:AY972078	InterPro:Cation/H_exchanger
InterPro:Cation/H_exchanger_CPA1	EnsemblPlantsGene:GLYMA_20G229900	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810
GO:GO:0006811	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950	GO:GO:0008150
GO:GO:0009628	GO:GO:0009651	GO:GO:0009987	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385
GO:GO:0015386	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0051453	GO:GO:0055075
GO:GO:0055085	GO:GO:0071805	GO:GO:0090333	GO:GO:0098719	GO:GO:1902600	InterPro:IPR038770
EnsemblPlants:KRG92790	ProteinID:KRG92790	ProteinID:KRG92790.1	InterPro:Na+/solute_symporter_sf	InterPro:Na/H_exchanger_plant	InterPro:NaH_exchanger
PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF117	UniProt:Q0IJ87	TIGRFAMs:TIGR00840
TMHMM:TMhelix	UniParc:UPI0000DD0618	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:46406681..46412869

Molecular Weight (calculated)

60105.9 Da

IEP (calculated)

7.286

GRAVY (calculated)

0.531

Length

546 amino acids

Sequence
(BLAST)

001: MVFEISTVVS KLQTLSTSDH ASVVSMNLFV ALLCGCIVLG HLLEENRWMN ESITALLIGV CTGIVILLFS GGKSSHILVF SEDLFFIYLL PPIIFNAGFQ
101: VKKKQFFVNF MTIMLFGAIG TLISCTIITL GATQIFKRLD VGPLELGDFL AIGAIFAATD SVCTLQVLNQ DETPLLYSLV FGEGVVNDAT SVVLFNAIQS
201: FDLNQIDPSI AGHFLGNFLY LFIASTMLGV LTGLLSAYII KKLYIGRHST DREVALMMLM AYLSYMLAEL SYLSGILTVF FCGIVMSHYT WHNVTESSRI
301: TTKHSFATLS FVAEIFIFLY VGMDALDIEK WKFVSDSPGT SVATSSVLLG LILLGRAAFV FPLSFLSNLA KKSPNEKISF RQQVIIWWAG LMRGAVSIAL
401: AYNQFTMSGH TSLRSNAIMI TSTITVVLFS TVVFGLLTKP LIRLLLPHTP HHKESSITIT TDPSTPSPKS VTVPLLGSAQ ESEVDIDGHD IHRPSSIRAL
501: LSTPTHTVHR LWRKFDDAFM RPVFGGRGFV PIEPGSPTER NGHQWR

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.