CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002905.1-P	Field mustard	plasma membrane	99.25	99.25
CDY45655	Canola	plasma membrane	94.93	95.65
AT5G55470.1	Thale cress	plasma membrane	90.62	91.3
VIT_19s0090g01480.t01	Wine grape	plasma membrane	70.36	71.98
Solyc10g006080.1.1	Tomato	plasma membrane	68.86	69.9
KRH46278	Soybean	plasma membrane	68.67	69.19
PGSC0003DMT400085382	Potato	plasma membrane	69.98	68.07
GSMUA_Achr5P04100_001	Banana	plasma membrane	61.91	63.46
TraesCS7A01G228400.1	Wheat	plasma membrane	62.1	62.81
TraesCS7D01G226200.1	Wheat	plasma membrane	61.91	62.62
TraesCS7B01G191300.1	Wheat	plasma membrane	61.73	62.43
HORVU7Hr1G046030.1	Barley	plasma membrane	61.73	62.43
KXG19894	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	61.35	61.7
Os06t0318500-00	Rice	plasma membrane	61.73	60.81
Zm00001d045883_P001	Maize	plasma membrane	61.91	60.55
CDY19707	Canola	plasma membrane	56.66	56.87
CDY00002	Canola	plasma membrane	57.04	56.82
CDY50586	Canola	plasma membrane	57.22	56.07
CDY25045	Canola	plasma membrane	57.22	56.07
CDY27804	Canola	plasma membrane	57.41	56.04
CDY41925	Canola	plasma membrane	57.6	55.92
CDY24699	Canola	plasma membrane	55.35	52.87
CDY05257	Canola	plasma membrane	55.16	52.5
CDX80670	Canola	plasma membrane	36.21	48.98
CDY29237	Canola	endoplasmic reticulum, plasma membrane, plastid	7.88	44.68
CDX86176	Canola	golgi, plasma membrane, plastid	12.2	42.76
CDX79331	Canola	plasma membrane	25.14	24.06
CDX67985	Canola	plasma membrane	25.14	24.06
CDX88553	Canola	plasma membrane	24.2	22.13
CDX87370	Canola	plasma membrane	25.33	20.96

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	GO:A0A078FVY5	UniProt:A0A078FVY5	EnsemblPlants:CDY17324	ProteinID:CDY17324
ProteinID:CDY17324.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810
GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628
GO:GO:0009651	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385	GO:GO:0016020	GO:GO:0016021
GO:GO:0035725	GO:GO:0055075	GO:GO:0055085	GO:GO:1902600	EnsemblPlantsGene:GSBRNA2T00095419001	InterPro:IPR038770
InterPro:NHX4	InterPro:Na+/solute_symporter_sf	InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110
PANTHER:PTHR10110:SF101	TMHMM:TMhelix	UniParc:UPI0004EE2561	SEG:seg	:	:

Description

BnaA10g09580DBnaA10g09580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FVY5]

Coordinates

chrLK032072:+:287839..290939

Molecular Weight (calculated)

59003.3 Da

IEP (calculated)

7.141

GRAVY (calculated)

0.526

Length

533 amino acids

Sequence
(BLAST)

001: MGIGLTEFLS IELATEHPQV IPISVFIVIL CLCLVIGHLL EENRWVNESI TAILVGAVSG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STTIISFGTW LLFPKLGFKG LTARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV LFNAVQKIHF
201: ESINGLTALR VFGNFLYLFS TSTLLGIGVG LVTSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR
301: QLHVFAMLSF IAETFIFLYV GTDALDFTKW KTSSLSVGGT LEVSGVMTAL VLLGRAAFVF PLSVLTNLMN RNAQRSESIT FKHQVIIWWA GLMRGAVSIA
401: LSFKQFTYSG VTTDPLDAAM VTNTIVVVLF TTLVFGFLTK PLVNYLLPHD ESSDNTGNSR GKQSAPGSPK EDATLPLLSF DESTSTNLSR AKDSLTLLIE
501: QPVYTIHRYW RKFDDTYMRP VFGGPRPVNQ PEC

Best Arabidopsis Sequence Match ( AT5G55470.1 )
(BLAST)

001: MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV LFNAVQKIQF
201: ESLTGWTALQ VFGNFLYLFS TSTLLGIGVG LITSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR
301: HVFAMLSFIA ETFIFLYVGT DALDFTKWKT SSLSFGGTLG VSGVITALVL LGRAAFVFPL SVLTNFMNRH TERNESITFK HQVIIWWAGL MRGAVSIALA
401: FKQFTYSGVT LDPVNAAMVT NTTIVVLFTT LVFGFLTKPL VNYLLPQDAS HNTGNRGKRT EPGSPKEDAT LPLLSFDESA STNFNRAKDS ISLLMEQPVY
501: TIHRYWRKFD DTYMRPIFGG PRRENQPEC

Arabidopsis Description

NHX4Sodium/hydrogen exchanger 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S397]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.