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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX67985 Canola plasma membrane 99.1 99.1
AT1G79610.1 Thale cress plasma membrane 87.97 91.59
CDX88553 Canola plasma membrane 88.33 84.39
CDX87370 Canola plasma membrane 90.66 78.42
KRH11690 Soybean plasma membrane 73.79 76.97
KRH36691 Soybean plasma membrane 73.61 76.78
Solyc04g056600.2.1 Tomato plasma membrane 73.07 76.65
KRH51250 Soybean plasma membrane 72.17 76.28
KXG35307 Sorghum plastid 72.71 75.56
Zm00001d019978_P001 Maize plasma membrane 72.53 75.37
TraesCS5B01G173800.1 Wheat plasma membrane 71.63 74.72
TraesCS5A01G176100.3 Wheat plasma membrane 71.63 74.58
Os09t0286400-01 Rice plasma membrane 71.63 74.58
TraesCS5D01G180800.1 Wheat plasma membrane 71.45 74.53
VIT_15s0024g00260.t01 Wine grape plasma membrane 31.96 73.55
VIT_15s0024g00280.t01 Wine grape golgi, plasma membrane 40.93 72.38
GSMUA_Achr2P05520_001 Banana plasma membrane 30.88 69.64
GSMUA_Achr10P... Banana peroxisome, plasma membrane, plastid 62.84 69.44
TraesCS5B01G259100.2 Wheat plasma membrane 64.09 68.39
TraesCS5A01G260700.1 Wheat plasma membrane 64.09 67.11
TraesCS5D01G268200.1 Wheat plasma membrane 64.09 67.11
HORVU5Hr1G053720.2 Barley plastid 71.45 66.33
KXG35876 Sorghum plasma membrane 63.73 65.74
TraesCS7B01G149100.1 Wheat plasma membrane 61.76 64.06
HORVU7Hr1G049400.10 Barley endoplasmic reticulum, plasma membrane 61.4 63.93
TraesCS7A01G242300.1 Wheat plasma membrane 62.12 63.84
TraesCS7D01G241200.1 Wheat plasma membrane 61.94 63.54
HORVU5Hr1G072440.26 Barley golgi, mitochondrion, nucleus, plastid 56.37 57.83
Os09t0482620-00 Rice golgi, mitochondrion, peroxisome 25.31 53.61
Zm00001d020892_P003 Maize plasma membrane 41.47 46.57
CDY19707 Canola plasma membrane 25.13 26.37
CDY00002 Canola plasma membrane 25.13 26.17
CDY50586 Canola plasma membrane 25.13 25.74
CDY25045 Canola plasma membrane 24.78 25.37
CDY17324 Canola plasma membrane 24.06 25.14
CDY41925 Canola plasma membrane 24.42 24.77
CDY27804 Canola plasma membrane 24.24 24.73
CDY45655 Canola plasma membrane 23.16 24.39
CDX86176 Canola golgi, plasma membrane, plastid 6.46 23.68
CDY29237 Canola endoplasmic reticulum, plasma membrane, plastid 3.95 23.4
CDY24699 Canola plasma membrane 23.16 23.12
CDY05257 Canola plasma membrane 23.16 23.04
CDX80670 Canola plasma membrane 14.54 20.56
Protein Annotations
MapMan:24.2.8.1.1GO:A0A078CQ54EnsemblPlants:CDX79331ProteinID:CDX79331ProteinID:CDX79331.1InterPro:Cation/H_exchanger
InterPro:Cation/H_exchanger_CPA1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006812
GO:GO:0006814GO:GO:0006885GO:GO:0008150GO:GO:0015299GO:GO:0015385GO:GO:0016020
GO:GO:0016021GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00132009001InterPro:NaH_exchangerPFAM:PF00999PRINTS:PR01084
PANTHER:PTHR10110PANTHER:PTHR10110:SF111TIGRFAMs:TIGR00840TMHMM:TMhelixUniParc:UPI0004EEB8C5SEG:seg
Description
BnaC06g19720D
Coordinates
chrLK031817:-:1404336..1408426
Molecular Weight (calculated)
62373.5 Da
IEP (calculated)
5.835
GRAVY (calculated)
0.373
Length
557 amino acids
Sequence
(BLAST)
001: MSELQISPAI HDPQGQEKQQ QAAGVGILLQ IMMLVLSFVL GHVLRRHKFY YLPEASASLL IGLIVGGLAN ISNTETSIRT WFNFHDEFFF LFLLPPIILY
101: PLFEFVLHIY SGFSLQPKPF FSNFGAIVTF SVLGTFVASM VTGVLVYLGG VMFLMYKLPF VECLMFGSLI SATDPVTVLS IFQELGSDVN LYALVFGESV
201: LNDAMAISLY RTMSLVRSQS AGQNFFMVIV RFLETFVGSM SAVSYEIILF HFIHKRVVSL NAKHLFKYAG LDVDNLQNLE CCLFVLFPYF SYMLAEGLSL
301: SGIVSILFTG IVMKHYTYSN LSTNSQRFVS SFFHLISSLA ETFVFIYMGF DIAMENHSWS HVGFILFSIL FIVIARAANV FGCGYLVNLV RPAHRKIPMT
401: HQKALWYSGL RGAMAFALAL QSVHDLPEGH GQTIFTATTA IVVVTVLLIG GSTGTMLEAL EVVGDGHDAT LGDGFEVVND RYMNRFDDED SPSGSGFRTK
501: LREFHKSAAS FTELDKNYLT PFFTSNNGDY DDDDDDNEHH HEETTPFTRR VDFYNRG
Best Arabidopsis Sequence Match ( AT1G79610.1 )
(BLAST)
001: MSSELQISPA IHDPQGQEKQ QQAAGVGILL QIMMLVLSFV LGHVLRRHKF YYLPEASASL LIGLIVGGLA NISNTETSIR TWFNFHDEFF FLFLLPPIIF
101: QSGFSLQPKP FFSNFGAIVT FSVLGTFVAS MVTGLLVYLG GVMFLMYRLP FVECLMFGSL ISATDPVTVL SIFQELGSDV NLYALVFGES VLNDAMAISL
201: YRTMSLVRSH SSGQNFFMVI VRFLETFVGS MSAGVGVGFT SALLFKYAGL DVDNLQNLEC CLFVLFPYFS YMLAEGLSLS GIVSILFTGI VMKHYTYSNL
301: SANSQRFVSA FFHLISSLAE TFVFIYMGFD IAMEKHSWSH LGFIFFSILF IVIARAANVF GCGYLVNLAR PAHRKIPMTH QKALWYSGLR GAMAFALALQ
401: SVHDLPEGHG QTIFTATTAI VVLTVLLIGG STGTMLEALE VVGDSHDTSL GDGFEVVNSR YMTSYDDEDT PPGSGFRTKL REFHKSAASF TELDRNYLTP
501: FFTSNNGDYD DEGNMEQHHE ERIPFTRRGN LNNRG
Arabidopsis Description
NHX6Sodium/hydrogen exchanger 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.