CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
mitochondrion 1
endoplasmic reticulum 2
vacuole 2
extracellular 1
plasma membrane 2
golgi 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d019978_P001	Maize	plasma membrane	98.32	98.32
TraesCS5A01G176100.3	Wheat	plasma membrane	93.66	93.83
TraesCS5B01G173800.1	Wheat	plasma membrane	93.47	93.82
TraesCS5D01G180800.1	Wheat	plasma membrane	93.28	93.63
Os09t0286400-01	Rice	plasma membrane	91.42	91.59
HORVU5Hr1G053720.2	Barley	plastid	93.47	83.5
KRH11690	Soybean	plasma membrane	78.54	78.84
KRH36691	Soybean	plasma membrane	77.8	78.09
KRH51250	Soybean	plasma membrane	76.49	77.8
Solyc04g056600.2.1	Tomato	plasma membrane	77.05	77.78
AT1G79610.1	Thale cress	plasma membrane	77.24	77.38
GSMUA_Achr2P05520_001	Banana	plasma membrane	34.89	75.71
AT1G54370.1	Thale cress	plasma membrane	73.13	75.24
Bra035130.1-P	Field mustard	cytosol, golgi, plasma membrane	69.96	73.39
VIT_15s0024g00280.t01	Wine grape	golgi, plasma membrane	43.1	73.33
CDX79331	Canola	plasma membrane	75.56	72.71
CDX67985	Canola	plasma membrane	75.37	72.53
VIT_15s0024g00260.t01	Wine grape	plasma membrane	32.46	71.9
KXG35876	Sorghum	plasma membrane	70.15	69.63
CDX88553	Canola	plasma membrane	74.44	68.44
CDX87370	Canola	plasma membrane	75.37	62.73
KXG19894	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	27.05	27.36
EES10186	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	27.24	26.99
KXG36886	Sorghum	plasma membrane	26.87	26.87
KXG21297	Sorghum	plasma membrane	27.24	26.74

Protein Annotations

MapMan:24.2.8.1.1	UniProt:A0A1B6QBK9	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006811	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885
GO:GO:0008150	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385	GO:GO:0016020	GO:GO:0016021
GO:GO:0035725	GO:GO:0055085	GO:GO:1902600	EnsemblPlants:KXG35307	ProteinID:KXG35307	ProteinID:KXG35307.1
InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF127	EnsemblPlantsGene:SORBI_3002G156000
TIGRFAMs:TIGR00840	TMHMM:TMhelix	UniParc:UPI0001C80DDA	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:47371978..47383549

Molecular Weight (calculated)

58840.4 Da

IEP (calculated)

5.358

GRAVY (calculated)

0.417

Length

536 amino acids

Sequence
(BLAST)

001: MALELRLASA SPPAGGGLAQ PPPLAPPGKE QQVAGVGILL QISMLVLSFV LGHVLRRHRF YYLPEASASL LIGLVVGGLA NISNTETNTR TWFNFHEEFF
101: FLFLLPPIIF QSGFSLSPKP FFANFGAIVT FAILGTFIAS VVTGVLVYLG GLTFLMYKLP LVECLMFGAL ISATDPVTVL SIFQELGSDV NLYALVFGES
201: VLNDAMAISL YRTMSSVRSH AAGGENLFMM ILQFLETFVG SMSSGVGVGF ISALLFKYAG LDVDNLQNLE CCLFVLFPYF SYMLAEGLGL SGIVSILFTG
301: MVMKHYTYSN LSDNSQRFVS AFFHLLSSLA ETFVFIYMGF DIAMEEHSWS HVGFIFFSII FIVVARAANV FSCAYLVNMS RPQHRRIPLK HQKALWFSGL
401: RGAMAFALAL QSVHELPEGH GKTIFTTTTA IVVLTVLLIG GSTGTMLEAL DVVGDENTSI ENYEDNNGYM PPSYEEGTSS GGGLRMKLKQ FHKSTTSFTA
501: LDKNYLTPFF TSQTDDDDDD FTGQQPQNRR LAFYDQ

Best Arabidopsis Sequence Match ( AT1G79610.1 )
(BLAST)

001: MSSELQISPA IHDPQGQEKQ QQAAGVGILL QIMMLVLSFV LGHVLRRHKF YYLPEASASL LIGLIVGGLA NISNTETSIR TWFNFHDEFF FLFLLPPIIF
101: QSGFSLQPKP FFSNFGAIVT FSVLGTFVAS MVTGLLVYLG GVMFLMYRLP FVECLMFGSL ISATDPVTVL SIFQELGSDV NLYALVFGES VLNDAMAISL
201: YRTMSLVRSH SSGQNFFMVI VRFLETFVGS MSAGVGVGFT SALLFKYAGL DVDNLQNLEC CLFVLFPYFS YMLAEGLSLS GIVSILFTGI VMKHYTYSNL
301: SANSQRFVSA FFHLISSLAE TFVFIYMGFD IAMEKHSWSH LGFIFFSILF IVIARAANVF GCGYLVNLAR PAHRKIPMTH QKALWYSGLR GAMAFALALQ
401: SVHDLPEGHG QTIFTATTAI VVLTVLLIGG STGTMLEALE VVGDSHDTSL GDGFEVVNSR YMTSYDDEDT PPGSGFRTKL REFHKSAASF TELDRNYLTP
501: FFTSNNGDYD DEGNMEQHHE ERIPFTRRGN LNNRG

Arabidopsis Description

NHX6Sodium/hydrogen exchanger 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.