Factsheet for Bra035130.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, cytosol

Predictor Summary:

nucleus 1
golgi 2
vacuole 2
extracellular 1
endoplasmic reticulum 1
plasma membrane 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	golgi
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G79610.1	Thale cress	plasma membrane	91.78	87.66
CDX87370	Canola	plasma membrane	99.8	79.19
Solyc04g056600.2.1	Tomato	plasma membrane	74.56	71.75
KRH11690	Soybean	plasma membrane	74.36	71.16
KRH36691	Soybean	plasma membrane	74.17	70.97
KRH51250	Soybean	plasma membrane	72.99	70.78
VIT_15s0024g00260.t01	Wine grape	plasma membrane	33.46	70.66
KXG35307	Sorghum	plastid	73.39	69.96
Zm00001d019978_P001	Maize	plasma membrane	73.19	69.78
TraesCS5B01G173800.1	Wheat	plasma membrane	72.6	69.48
TraesCS5A01G176100.3	Wheat	plasma membrane	72.6	69.35
TraesCS5D01G180800.1	Wheat	plasma membrane	72.41	69.29
Os09t0286400-01	Rice	plasma membrane	72.41	69.16
VIT_15s0024g00280.t01	Wine grape	golgi, plasma membrane	40.31	65.4
TraesCS5B01G259100.2	Wheat	plasma membrane	66.54	65.13
TraesCS5D01G268200.1	Wheat	plasma membrane	66.54	63.91
TraesCS5A01G260700.1	Wheat	plasma membrane	66.54	63.91
GSMUA_Achr10P...	Banana	peroxisome, plasma membrane, plastid	63.01	63.89
GSMUA_Achr2P05520_001	Banana	plasma membrane	30.53	63.16
KXG35876	Sorghum	plasma membrane	65.75	62.22
HORVU5Hr1G053720.2	Barley	plastid	72.21	61.5
TraesCS7B01G149100.1	Wheat	plasma membrane	63.6	60.52
TraesCS7A01G242300.1	Wheat	plasma membrane	64.19	60.52
TraesCS7D01G241200.1	Wheat	plasma membrane	64.19	60.41
HORVU7Hr1G049400.10	Barley	endoplasmic reticulum, plasma membrane	63.01	60.19
HORVU5Hr1G072440.26	Barley	golgi, mitochondrion, nucleus, plastid	58.51	55.06
Os09t0482620-00	Rice	golgi, mitochondrion, peroxisome	27.01	52.47
Zm00001d020892_P003	Maize	plasma membrane	43.64	44.96
Bra009647.1-P	Field mustard	cytosol	3.72	26.76
Bra020599.1-P	Field mustard	plasma membrane	24.66	24.56
Bra036110.1-P	Field mustard	plasma membrane	25.44	23.94
Bra002905.1-P	Field mustard	plasma membrane	24.85	23.83
Bra039469.1-P	Field mustard	plasma membrane	24.85	23.26
Bra020755.1-P	Field mustard	plasma membrane	23.48	22.22
Bra009975.1-P	Field mustard	golgi, plasma membrane, plastid	6.26	21.05

Protein Annotations

MapMan:24.2.8.1.1	EnsemblPlantsGene:Bra035130	EnsemblPlants:Bra035130.1	EnsemblPlants:Bra035130.1-P	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0006810	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0008150
GO:GO:0015297	GO:GO:0015299	GO:GO:0015385	GO:GO:0016020	GO:GO:0016021	GO:GO:0035725
GO:GO:0055085	GO:GO:1902600	UniProt:M4F233	InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084
PANTHER:PTHR10110	PANTHER:PTHR10110:SF111	TMHMM:TMhelix	UniParc:UPI0002541DB6	SEG:seg	:

Description

AT1G79610 (E=2e-110) ATNHX6, NHX6 | sodium proton exchanger, putative (NHX6)

Coordinates

chrA07:-:22297898..22301638

Molecular Weight (calculated)

56912.6 Da

IEP (calculated)

5.366

GRAVY (calculated)

0.297

Length

511 amino acids

Sequence
(BLAST)

001: MSSSELQISP AIHDPQGQEK QQQAAGVGIL LQIMMLVLSF VLGHVLRRHK FYYLPEASAS LLIGLIVGGL ANVSNTETSI RTWFNFHDEF FFLFLLPPII
101: LYPLIEFASA TKPFFSNFGA IVTFSVLGTF VASIVTGVLV YLGGVMFLMY RLPFVECLMF GSLISATDPV TVLSIFQELG SDVNLYALVF GESVLNDAMA
201: ISLYRTMSLV RSHSTGQNFF MVIVRFLETF VGSMSAGLDV DNLQNLECCL FVLFPYFSYM LAEGLSLSGI VSILFTGIVM KHYTYSNLST NSQRFVSAFF
301: HLISSLAETF VFIYMGFDIA MEKHSWAANV FGCGYLVNLA RPAHRKIPMT HQKALWYSGL RGAMAFALAL QSVHELPDGH GQTIFTATTA IVVVTVLLIG
401: GSTGTMLEAL EVVGDSRDTS LGDGFEVVNN RYMTRFDDEG SPSESGFRTK LREFHKSAKS FSELDRNYLT PFFTSNNGDY DEDDDINDDQ HHEERIPFTR
501: RGNFNNRGLT F

Best Arabidopsis Sequence Match ( AT1G79610.1 )
(BLAST)

001: MSSELQISPA IHDPQGQEKQ QQAAGVGILL QIMMLVLSFV LGHVLRRHKF YYLPEASASL LIGLIVGGLA NISNTETSIR TWFNFHDEFF FLFLLPPIIF
101: QSGFSLQPKP FFSNFGAIVT FSVLGTFVAS MVTGLLVYLG GVMFLMYRLP FVECLMFGSL ISATDPVTVL SIFQELGSDV NLYALVFGES VLNDAMAISL
201: YRTMSLVRSH SSGQNFFMVI VRFLETFVGS MSAGVGVGFT SALLFKYAGL DVDNLQNLEC CLFVLFPYFS YMLAEGLSLS GIVSILFTGI VMKHYTYSNL
301: SANSQRFVSA FFHLISSLAE TFVFIYMGFD IAMEKHSWSH LGFIFFSILF IVIARAANVF GCGYLVNLAR PAHRKIPMTH QKALWYSGLR GAMAFALALQ
401: SVHDLPEGHG QTIFTATTAI VVLTVLLIGG STGTMLEALE VVGDSHDTSL GDGFEVVNSR YMTSYDDEDT PPGSGFRTKL REFHKSAASF TELDRNYLTP
501: FFTSNNGDYD DEGNMEQHHE ERIPFTRRGN LNNRG

Arabidopsis Description

NHX6Sodium/hydrogen exchanger 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.