Factsheet for Bra002905.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
vacuole 2
extracellular 1
endoplasmic reticulum 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17324	Canola	plasma membrane	99.25	99.25
AT5G55470.1	Thale cress	plasma membrane	90.62	91.3
Bra009647.1-P	Field mustard	cytosol	10.88	81.69
VIT_19s0090g01480.t01	Wine grape	plasma membrane	70.54	72.17
Solyc10g006080.1.1	Tomato	plasma membrane	68.86	69.9
KRH46278	Soybean	plasma membrane	68.86	69.38
PGSC0003DMT400085382	Potato	plasma membrane	69.98	68.07
GSMUA_Achr5P04100_001	Banana	plasma membrane	62.1	63.65
TraesCS7A01G228400.1	Wheat	plasma membrane	62.48	63.19
TraesCS7D01G226200.1	Wheat	plasma membrane	62.29	63.0
HORVU7Hr1G046030.1	Barley	plasma membrane	62.1	62.81
TraesCS7B01G191300.1	Wheat	plasma membrane	62.1	62.81
KXG19894	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	61.54	61.89
Os06t0318500-00	Rice	plasma membrane	62.1	61.18
Zm00001d045883_P001	Maize	plasma membrane	62.1	60.73
Bra020599.1-P	Field mustard	plasma membrane	54.97	57.12
Bra039469.1-P	Field mustard	plasma membrane	57.97	56.59
Bra036110.1-P	Field mustard	plasma membrane	57.6	56.54
Bra020755.1-P	Field mustard	plasma membrane	54.03	53.33
Bra009975.1-P	Field mustard	golgi, plasma membrane, plastid	12.2	42.76
Bra035130.1-P	Field mustard	cytosol, golgi, plasma membrane	23.83	24.85

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	EnsemblPlantsGene:Bra002905	EnsemblPlants:Bra002905.1	EnsemblPlants:Bra002905.1-P	InterPro:Cation/H_exchanger
InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0006812	GO:GO:0006814
GO:GO:0006885	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0015297
GO:GO:0015299	GO:GO:0015385	GO:GO:0016020	GO:GO:0016021	GO:GO:0035725	GO:GO:0055075
GO:GO:0055085	GO:GO:1902600	InterPro:IPR038770	UniProt:M4CFC3	InterPro:NHX4	InterPro:Na+/solute_symporter_sf
InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF101	TMHMM:TMhelix
UniParc:UPI0002544482	SEG:seg	:	:	:	:

Description

AT5G55470 (E=3e-264) ATNHX3, NHX3 | ATNHX3; sodium ion transmembrane transporter/ sodium:hydrogen antiporter

Coordinates

chrA10:-:6850100..6852981

Molecular Weight (calculated)

58935.3 Da

IEP (calculated)

7.372

GRAVY (calculated)

0.537

Length

533 amino acids

Sequence
(BLAST)

001: MGIGLTEFLS IELATEHPKV IPISVFIVIL CLCLVIGHLL EENRWVNESI TAILVGAVSG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STTIISFGTW LLFPKLGFKG LTARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV LFNAVQKIHF
201: ESINGLTALR VLGNFLYLFS TSTLLGIGVG LVTSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR
301: QLHVFAMLSF IAETFIFLYV GTDALDFTKW KTSSLSVGGT LEVSGVITAL VLLGRAAFVF PLSVLTNLMN RNAQRSESIT FKHQVIIWWA GLMRGAVSIA
401: LAFKQFTYSG VTTDPLDAAM VTNTIVVVLF TTLVFGFLTK PLVNYLLPHD ESSDNTGNSR GKQSAPGSPK EDATLPLLSF DESTSTNLSR AKDSLTLLIE
501: QPVYTIHRYW RKFDDTYMRP VFGGPRPVNQ PEC

Best Arabidopsis Sequence Match ( AT5G55470.1 )
(BLAST)

001: MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV LFNAVQKIQF
201: ESLTGWTALQ VFGNFLYLFS TSTLLGIGVG LITSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR
301: HVFAMLSFIA ETFIFLYVGT DALDFTKWKT SSLSFGGTLG VSGVITALVL LGRAAFVFPL SVLTNFMNRH TERNESITFK HQVIIWWAGL MRGAVSIALA
401: FKQFTYSGVT LDPVNAAMVT NTTIVVLFTT LVFGFLTKPL VNYLLPQDAS HNTGNRGKRT EPGSPKEDAT LPLLSFDESA STNFNRAKDS ISLLMEQPVY
501: TIHRYWRKFD DTYMRPIFGG PRRENQPEC

Arabidopsis Description

NHX4Sodium/hydrogen exchanger 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S397]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.