Factsheet for AT5G55470.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
mitochondrion 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra002905.1-P	Field mustard	plasma membrane	91.3	90.62
CDY17324	Canola	plasma membrane	91.3	90.62
CDY45655	Canola	plasma membrane	88.66	88.66
Bra009647.1-P	Field mustard	cytosol	10.4	77.46
VIT_19s0090g01480.t01	Wine grape	plasma membrane	72.4	73.51
Solyc10g006080.1.1	Tomato	plasma membrane	70.51	71.05
KRH46278	Soybean	plasma membrane	70.32	70.32
PGSC0003DMT400085382	Potato	plasma membrane	70.89	68.43
TraesCS7A01G228400.1	Wheat	plasma membrane	65.03	65.28
TraesCS7D01G226200.1	Wheat	plasma membrane	64.65	64.9
HORVU7Hr1G046030.1	Barley	plasma membrane	64.65	64.9
GSMUA_Achr5P04100_001	Banana	plasma membrane	63.71	64.81
TraesCS7B01G191300.1	Wheat	plasma membrane	64.46	64.71
Os06t0318500-00	Rice	plasma membrane	65.03	63.59
KXG19894	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	63.52	63.4
Zm00001d045883_P001	Maize	plasma membrane	63.71	61.83
AT5G27150.1	Thale cress	plasma membrane	57.66	56.69
AT3G05030.4	Thale cress	plasma membrane	57.28	55.49
AT3G06370.3	Thale cress	plasma membrane	56.71	54.35
AT1G54370.1	Thale cress	plasma membrane	26.09	26.49
AT1G79610.1	Thale cress	plasma membrane	26.28	25.98

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	EntrezGene:835640	UniProt:A0A178UM68	ProteinID:AED96632.1	EMBL:AF490588
EMBL:AK221571	ArrayExpress:AT5G55470	EnsemblPlantsGene:AT5G55470	RefSeq:AT5G55470	TAIR:AT5G55470	RefSeq:AT5G55470-TAIR-G
EnsemblPlants:AT5G55470.1	TAIR:AT5G55470.1	Symbol:ATNHX3	Unigene:At.29439	ProteinID:BAB08564.1	InterPro:Cation/H_exchanger
InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810	GO:GO:0006811
GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0015081	GO:GO:0015297	GO:GO:0015299	GO:GO:0015385
GO:GO:0015386	GO:GO:0016020	GO:GO:0016021	GO:GO:0019725	GO:GO:0035725	GO:GO:0051453
GO:GO:0055075	GO:GO:0055085	GO:GO:0071805	GO:GO:0098719	GO:GO:1902600	InterPro:IPR038770
InterPro:NHX4	RefSeq:NP_200358.1	InterPro:Na+/solute_symporter_sf	InterPro:NaH_exchanger	ProteinID:OAO94427.1	PFAM:PF00999
PO:PO:0000003	PO:PO:0000293	PO:PO:0007115	PO:PO:0007131	PO:PO:0007611	PO:PO:0007616
PO:PO:0009001	PO:PO:0009005	PO:PO:0009025	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0020137	PO:PO:0025022	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF101
UniProt:Q8S397	TIGRFAMs:TIGR00840	TMHMM:TMhelix	UniParc:UPI00000A66C8	SEG:seg	:

Description

NHX4Sodium/hydrogen exchanger 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8S397]

Coordinates

chr5:-:22469245..22472706

Molecular Weight (calculated)

58875.1 Da

IEP (calculated)

8.211

GRAVY (calculated)

0.485

Length

529 amino acids

Sequence
(BLAST)

001: MSIGLTEFVT NKLAAEHPQV IPISVFIAIL CLCLVIGHLL EENRWVNESI TAILVGAASG TVILLISKGK SSHILVFDEE LFFIYLLPPI IFNAGFQVKK
101: KKFFHNFLTI MSFGVIGVFI STVIISFGTW WLFPKLGFKG LSARDYLAIG TIFSSTDTVC TLQILHQDET PLLYSLVFGE GVVNDATSVV LFNAVQKIQF
201: ESLTGWTALQ VFGNFLYLFS TSTLLGIGVG LITSFVLKTL YFGRHSTTRE LAIMVLMAYL SYMLAELFSL SGILTVFFCG VLMSHYASYN VTESSRITSR
301: HVFAMLSFIA ETFIFLYVGT DALDFTKWKT SSLSFGGTLG VSGVITALVL LGRAAFVFPL SVLTNFMNRH TERNESITFK HQVIIWWAGL MRGAVSIALA
401: FKQFTYSGVT LDPVNAAMVT NTTIVVLFTT LVFGFLTKPL VNYLLPQDAS HNTGNRGKRT EPGSPKEDAT LPLLSFDESA STNFNRAKDS ISLLMEQPVY
501: TIHRYWRKFD DTYMRPIFGG PRRENQPEC

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.