Factsheet for TraesCS5B01G173800.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
endoplasmic reticulum 2
extracellular 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, plasma membrane
iPSORT:	plastid
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G180800.1	Wheat	plasma membrane	99.81	99.81
TraesCS5A01G176100.3	Wheat	plasma membrane	99.81	99.63
KXG35307	Sorghum	plastid	93.82	93.47
Zm00001d019978_P001	Maize	plasma membrane	93.45	93.1
Os09t0286400-01	Rice	plasma membrane	91.2	91.03
HORVU5Hr1G053720.2	Barley	plastid	99.44	88.5
KRH11690	Soybean	plasma membrane	78.09	78.09
KRH51250	Soybean	plasma membrane	76.59	77.61
KRH36691	Soybean	plasma membrane	77.34	77.34
Solyc04g056600.2.1	Tomato	plasma membrane	76.22	76.65
AT1G79610.1	Thale cress	plasma membrane	76.03	75.89
GSMUA_Achr2P05520_001	Banana	plasma membrane	34.27	74.09
AT1G54370.1	Thale cress	plasma membrane	72.28	74.09
VIT_15s0024g00280.t01	Wine grape	golgi, plasma membrane	43.45	73.65
Bra035130.1-P	Field mustard	cytosol, golgi, plasma membrane	69.48	72.6
TraesCS5B01G259100.2	Wheat	plasma membrane	70.41	72.03
CDX79331	Canola	plasma membrane	74.72	71.63
CDX67985	Canola	plasma membrane	74.53	71.45
VIT_15s0024g00260.t01	Wine grape	plasma membrane	32.02	70.66
TraesCS7B01G149100.1	Wheat	plasma membrane	70.41	70.02
CDX88553	Canola	plasma membrane	73.41	67.24
CDX87370	Canola	plasma membrane	74.53	61.8
TraesCS7B01G191300.1	Wheat	plasma membrane	27.15	27.51
TraesCS4B01G125700.1	Wheat	golgi, plasma membrane, vacuole	25.47	26.56
TraesCS1B01G112700.1	Wheat	plasma membrane	26.03	25.46
TraesCS2B01G141900.1	Wheat	plasma membrane	24.91	22.24

Protein Annotations

MapMan:24.2.8.1.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0008150	GO:GO:0015299
GO:GO:0015385	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:NaH_exchanger	PFAM:PF00999
PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF127	TIGRFAMs:TIGR00840	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5B01G173800
EnsemblPlants:TraesCS5B01G173800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:318993518..319001967

Molecular Weight (calculated)

58421.1 Da

IEP (calculated)

4.812

GRAVY (calculated)

0.460

Length

534 amino acids

Sequence
(BLAST)

001: MSLELSMALA APPGGGLLAP PPPAPPGKEQ QVAGVGILLQ ISMLVLSFVL GHVLRRHRFY YLPEASASLL IGLVVGGLAN ISNTETNTRT WFNFHEEFFF
101: LFLLPPIIFQ SGFSLSPKPF FANFGAIVTF AILGTFIASI VTGMLVYLGG LTFLMYKLPL VECLMFGALI SATDPVTVLS IFQELGSDVN LYALVFGESV
201: LNDAMAISLY RTMSSVRSNA AGGENIFMMI LQFLEIFVGS MSSGVGVGFI SSLLFKYAGL DIDNLQNLEC CLFVLFPYFS YMLAEGLGLS GIVSILFTGM
301: VMKHYTYSNL SDNSQRFVSA FFHLLSSLAE TFVFIYMGFD IAMEEHSWSH VGFIIFSIIF IIVARAANVF SCAYLVNISR PEHRRIPLNH QKALCFSGLR
401: GAMAFALALQ SVHELPEGHG KTILTATTAI VVLTVLLIGG STGTMLEALD VIGDENTSIE TYEDNNGYIP PTYEEGTSSG GGLRMKLKEF HKSTTSFTAL
501: DKNYLTPFFT SQTDDDADDF GDQPQNQRRG FYDQ

Best Arabidopsis Sequence Match ( AT1G79610.1 )
(BLAST)

001: MSSELQISPA IHDPQGQEKQ QQAAGVGILL QIMMLVLSFV LGHVLRRHKF YYLPEASASL LIGLIVGGLA NISNTETSIR TWFNFHDEFF FLFLLPPIIF
101: QSGFSLQPKP FFSNFGAIVT FSVLGTFVAS MVTGLLVYLG GVMFLMYRLP FVECLMFGSL ISATDPVTVL SIFQELGSDV NLYALVFGES VLNDAMAISL
201: YRTMSLVRSH SSGQNFFMVI VRFLETFVGS MSAGVGVGFT SALLFKYAGL DVDNLQNLEC CLFVLFPYFS YMLAEGLSLS GIVSILFTGI VMKHYTYSNL
301: SANSQRFVSA FFHLISSLAE TFVFIYMGFD IAMEKHSWSH LGFIFFSILF IVIARAANVF GCGYLVNLAR PAHRKIPMTH QKALWYSGLR GAMAFALALQ
401: SVHDLPEGHG QTIFTATTAI VVLTVLLIGG STGTMLEALE VVGDSHDTSL GDGFEVVNSR YMTSYDDEDT PPGSGFRTKL REFHKSAASF TELDRNYLTP
501: FFTSNNGDYD DEGNMEQHHE ERIPFTRRGN LNNRG

Arabidopsis Description

NHX6Sodium/hydrogen exchanger 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.