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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:golgi, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra035130.1-P Field mustard cytosol, golgi, plasma membrane 79.19 99.8
CDX88553 Canola plasma membrane 85.25 94.17
AT1G79610.1 Thale cress plasma membrane 77.8 93.64
CDX67985 Canola plasma membrane 78.57 90.84
CDX79331 Canola plasma membrane 78.42 90.66
Solyc04g056600.2.1 Tomato plasma membrane 64.29 77.97
KRH11690 Soybean plasma membrane 63.66 76.78
KRH36691 Soybean plasma membrane 63.51 76.59
KRH51250 Soybean plasma membrane 62.42 76.28
KXG35307 Sorghum plastid 62.73 75.37
Zm00001d019978_P001 Maize plasma membrane 62.58 75.19
Os09t0286400-01 Rice plasma membrane 61.96 74.58
TraesCS5B01G173800.1 Wheat plasma membrane 61.8 74.53
TraesCS5A01G176100.3 Wheat plasma membrane 61.8 74.39
VIT_15s0024g00260.t01 Wine grape plasma membrane 27.95 74.38
TraesCS5D01G180800.1 Wheat plasma membrane 61.65 74.34
VIT_15s0024g00280.t01 Wine grape golgi, plasma membrane 34.63 70.79
TraesCS5B01G259100.2 Wheat plasma membrane 56.68 69.92
GSMUA_Achr10P... Banana peroxisome, plasma membrane, plastid 54.66 69.84
TraesCS5D01G268200.1 Wheat plasma membrane 56.68 68.61
TraesCS5A01G260700.1 Wheat plasma membrane 56.68 68.61
GSMUA_Achr2P05520_001 Banana plasma membrane 26.09 68.02
KXG35876 Sorghum plasma membrane 56.21 67.04
HORVU5Hr1G053720.2 Barley plastid 61.49 66.0
TraesCS7B01G149100.1 Wheat plasma membrane 54.19 64.99
TraesCS7A01G242300.1 Wheat plasma membrane 54.66 64.94
HORVU7Hr1G049400.10 Barley endoplasmic reticulum, plasma membrane 53.88 64.86
TraesCS7D01G241200.1 Wheat plasma membrane 54.66 64.83
HORVU5Hr1G072440.26 Barley golgi, mitochondrion, nucleus, plastid 49.38 58.56
Os09t0482620-00 Rice golgi, mitochondrion, peroxisome 21.74 53.23
Zm00001d020892_P003 Maize plasma membrane 36.96 47.98
CDY19707 Canola plasma membrane 21.74 26.37
CDY00002 Canola plasma membrane 21.74 26.17
CDY50586 Canola plasma membrane 21.43 25.37
CDY25045 Canola plasma membrane 21.43 25.37
CDY17324 Canola plasma membrane 20.96 25.33
CDY27804 Canola plasma membrane 21.12 24.91
CDY41925 Canola plasma membrane 21.12 24.77
CDY45655 Canola plasma membrane 20.19 24.57
CDY29237 Canola endoplasmic reticulum, plasma membrane, plastid 3.57 24.47
CDX86176 Canola golgi, plasma membrane, plastid 5.75 24.34
CDY24699 Canola plasma membrane 20.03 23.12
CDY05257 Canola plasma membrane 20.03 23.04
CDX80670 Canola plasma membrane 12.89 21.07
Protein Annotations
MapMan:24.2.8.1.1GO:A0A078DDS1EnsemblPlants:CDX87370ProteinID:CDX87370ProteinID:CDX87370.1InterPro:Cation/H_exchanger
InterPro:Cation/H_exchanger_CPA1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0006812
GO:GO:0006814GO:GO:0006885GO:GO:0008150GO:GO:0015299GO:GO:0015385GO:GO:0016020
GO:GO:0016021GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00146338001InterPro:NaH_exchangerPFAM:PF00999PRINTS:PR01084
PANTHER:PTHR10110PANTHER:PTHR10110:SF111TMHMM:TMhelixUniParc:UPI0004EEECE6SEG:seg:
Description
BnaA07g35030D
Coordinates
chrLK031850:+:307632..311415
Molecular Weight (calculated)
72410.9 Da
IEP (calculated)
6.688
GRAVY (calculated)
0.416
Length
644 amino acids
Sequence
(BLAST)
001: MSSSELQISP AIHDPQGQEK QQQAAGVGIL LQIMMLVLSF VLGHVLRRHK FYYLPEASAS LLIGLIVGGL ANVSNTETSI RTWFNFHDEF FFLFLLPPII
101: LYPLIEFASA TSLCCFLDVL VCTQSGFSLQ PKPFFSNFGA IVTFSVLGTF VASIVTGVLV YLGGVMFLMY RLPFVECLMF GSLISATDPV TVLSIFQELG
201: SDVNLYALVF GESVLNDAMA ISLYRTMSLV RSHSTGQNFF MVIVRFLETF VGSMSAGLLL LSASSFFLRL LNLLKLSTSF SNLRKVTYKY QTKVYISSVS
301: TFSSVIIYSY IFALWVIKDT NVCFCRCWSW IYFCPHILFW FYLNAKHLFK YAGLDVDNLQ NLECCLFVLF PYFSYMLAEG LSLSGIVSIL FTGIVMKHYT
401: YSNLSTNSQR FVSAFFHLIS SLAETFVFIY MGFDIAMEKH SWSHVGFIFF SILFIVIARA ANVFGCGYLV NLARPAHKKI PMTHQKALWY SGLRGAMAFA
501: LALQSVHELP DGHGQTIFTA TTAIVVVTVL LIGGSTGTML EALEVVGDSR DTSLGDGFEV VNNRYMTRFD DEGSPSESGF RTKLREFHKS AKSFSELDRN
601: YLTPFFTSNN GDYDEDDDIN DDQHHEERIP FTRRGNFNNR GLTF
Best Arabidopsis Sequence Match ( AT1G79610.1 )
(BLAST)
001: MSSELQISPA IHDPQGQEKQ QQAAGVGILL QIMMLVLSFV LGHVLRRHKF YYLPEASASL LIGLIVGGLA NISNTETSIR TWFNFHDEFF FLFLLPPIIF
101: QSGFSLQPKP FFSNFGAIVT FSVLGTFVAS MVTGLLVYLG GVMFLMYRLP FVECLMFGSL ISATDPVTVL SIFQELGSDV NLYALVFGES VLNDAMAISL
201: YRTMSLVRSH SSGQNFFMVI VRFLETFVGS MSAGVGVGFT SALLFKYAGL DVDNLQNLEC CLFVLFPYFS YMLAEGLSLS GIVSILFTGI VMKHYTYSNL
301: SANSQRFVSA FFHLISSLAE TFVFIYMGFD IAMEKHSWSH LGFIFFSILF IVIARAANVF GCGYLVNLAR PAHRKIPMTH QKALWYSGLR GAMAFALALQ
401: SVHDLPEGHG QTIFTATTAI VVLTVLLIGG STGTMLEALE VVGDSHDTSL GDGFEVVNSR YMTSYDDEDT PPGSGFRTKL REFHKSAASF TELDRNYLTP
501: FFTSNNGDYD DEGNMEQHHE ERIPFTRRGN LNNRG
Arabidopsis Description
NHX6Sodium/hydrogen exchanger 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU6]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.