CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid

Predictor Summary:

nucleus 1
mitochondrion 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, plastid
Any Predictor:	golgi, nucleus, plasma membrane
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29237	Canola	endoplasmic reticulum, plasma membrane, plastid	61.84	100.0
Bra009975.1-P	Field mustard	golgi, plasma membrane, plastid	99.34	99.34
KRH12862	Soybean	golgi, plasma membrane, vacuole	19.74	25.64
CDY19707	Canola	plasma membrane	69.74	19.96
CDY25045	Canola	plasma membrane	69.74	19.49
CDY00002	Canola	plasma membrane	68.42	19.44
CDY50586	Canola	plasma membrane	69.08	19.3
CDY27804	Canola	plasma membrane	63.82	17.77
CDY41925	Canola	plasma membrane	63.16	17.49
CDY24699	Canola	plasma membrane	51.32	13.98
CDY05257	Canola	plasma membrane	51.32	13.93
CDY17324	Canola	plasma membrane	42.76	12.2
CDY45655	Canola	plasma membrane	40.79	11.72
CDX80670	Canola	plasma membrane	26.97	10.41
CDX67985	Canola	plasma membrane	23.68	6.46
CDX79331	Canola	plasma membrane	23.68	6.46
CDX88553	Canola	plasma membrane	23.68	6.17
CDX87370	Canola	plasma membrane	24.34	5.75
Zm00001d041859_P001	Maize	mitochondrion	5.26	5.26

Protein Annotations

MapMan:35.1	GO:A0A078DA80	EnsemblPlants:CDX86176	ProteinID:CDX86176	ProteinID:CDX86176.1	InterPro:Cation/H_exchanger_CPA1
GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810	GO:GO:0006812	GO:GO:0006814
GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009651	GO:GO:0015299	GO:GO:0016020
GO:GO:0016021	GO:GO:0055075	EnsemblPlantsGene:GSBRNA2T00144241001	InterPro:Na/H_exchanger_plant	PANTHER:PTHR10110	PANTHER:PTHR10110:SF117
TMHMM:TMhelix	UniParc:UPI0004EF1FAD	SEG:seg	:	:	:

Description

BnaA06g28930D

Coordinates

chrLK031845:-:182876..187012

Molecular Weight (calculated)

17141.1 Da

IEP (calculated)

10.534

GRAVY (calculated)

0.291

Length

152 amino acids

Sequence
(BLAST)

001: MSKVFQLFSP PFVQKHFVHR HDVTCNIGMM SLAAIRLEWH TFGTLSFLAD TFIFLYVGMD ALDIDKWRIV RDSLGTSFAV SSILIALLML GRAAFVFPLS
101: FLPNLAKKNQ SEKINFKMQL YSFMRPVFGG RGFGPFVSSS PTERDPPGLR GV

Best Arabidopsis Sequence Match ( AT5G27150.1 )
(BLAST)

001: MLDSLVSKLP SLSTSDHASV VALNLFVALL CACIVLGHLL EENRWMNESI TALLIGLGTG VTILLISKGK SSHLLVFSED LFFIYLLPPI IFNAGFQVKK
101: KQFFRNFVTI MLFGAVGTII SCTIISLGVT QFFKKLDIGT FDLGDYLAIG AIFAATDSVC TLQVLNQDET PLLYSLVFGE GVVNDATSVV VFNAIQSFDL
201: THLNHEAAFH LLGNFLYLFL LSTLLGAATG LISAYVIKKL YFGRHSTDRE VALMMLMAYL SYMLAELFDL SGILTVFFCG IVMSHYTWHN VTESSRITTK
301: HTFATLSFLA ETFIFLYVGM DALDIDKWRS VSDTPGTSIA VSSILMGLVM VGRAAFVFPL SFLSNLAKKN QSEKINFNMQ VVIWWSGLMR GAVSMALAYN
401: KFTRAGHTDV RGNAIMITST ITVCLFSTVV FGMLTKPLIS YLLPHQNATT SMLSDDNTPK SIHIPLLDQD SFIEPSGNHN VPRPDSIRGF LTRPTRTVHY
501: YWRQFDDSFM RPVFGGRGFV PFVPGSPTER NPPDLSKA

Arabidopsis Description

NHX1Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:Q0WVZ5]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.