Factsheet for GSMUA_Achr10P03540_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, plasma membrane

Predictor Summary:

nucleus 1
peroxisome 1
vacuole 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0024g00260.t01	Wine grape	plasma membrane	32.94	68.59
KRH36691	Soybean	plasma membrane	72.42	68.35
KRH11690	Soybean	plasma membrane	72.42	68.35
AT1G54370.1	Thale cress	plasma membrane	69.84	67.56
Solyc04g056600.2.1	Tomato	plasma membrane	71.03	67.42
KRH51250	Soybean	plasma membrane	70.44	67.36
TraesCS5B01G259100.2	Wheat	plasma membrane	69.25	66.86
AT1G79610.1	Thale cress	plasma membrane	70.44	66.36
TraesCS5A01G260700.1	Wheat	plasma membrane	69.25	65.6
TraesCS5D01G268200.1	Wheat	plasma membrane	69.25	65.6
KXG35876	Sorghum	plasma membrane	68.25	63.7
TraesCS7B01G149100.1	Wheat	plasma membrane	67.46	63.31
Bra035130.1-P	Field mustard	cytosol, golgi, plasma membrane	63.89	63.01
CDX79331	Canola	plasma membrane	69.44	62.84
HORVU7Hr1G049400.10	Barley	endoplasmic reticulum, plasma membrane	66.67	62.8
TraesCS7A01G242300.1	Wheat	plasma membrane	67.46	62.73
CDX67985	Canola	plasma membrane	69.25	62.66
TraesCS7D01G241200.1	Wheat	plasma membrane	67.06	62.25
GSMUA_Achr2P05520_001	Banana	plasma membrane	30.16	61.54
VIT_15s0024g00280.t01	Wine grape	golgi, plasma membrane	37.5	60.0
CDX88553	Canola	plasma membrane	67.66	58.49
Os09t0482620-00	Rice	golgi, mitochondrion, peroxisome	29.56	56.65
HORVU5Hr1G072440.26	Barley	golgi, mitochondrion, nucleus, plastid	58.93	54.7
CDX87370	Canola	plasma membrane	69.84	54.66
Zm00001d020892_P003	Maize	plasma membrane	45.63	46.37
GSMUA_Achr5P04100_001	Banana	plasma membrane	27.58	26.73
GSMUA_Achr8P21980_001	Banana	plasma membrane	26.39	24.54
GSMUA_Achr8P06790_001	Banana	plasma membrane	26.19	24.54
GSMUA_Achr2P01860_001	Banana	plasma membrane	26.19	24.4
GSMUA_Achr11P...	Banana	plasma membrane	25.99	24.39
GSMUA_Achr2P01560_001	Banana	plasma membrane	25.99	24.35
GSMUA_Achr10P...	Banana	plasma membrane	26.19	24.31
GSMUA_Achr3P23840_001	Banana	plasma membrane	25.79	24.21
GSMUA_Achr6P20250_001	Banana	plasma membrane	25.99	22.86

Protein Annotations

MapMan:24.2.8.1.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006811	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0008150
GO:GO:0015297	GO:GO:0015299	GO:GO:0015385	GO:GO:0016020	GO:GO:0016021	GO:GO:0035725
GO:GO:0055085	GO:GO:1902600	EnsemblPlantsGene:GSMUA_Achr10G03540_001	EnsemblPlants:GSMUA_Achr10P03540_001	EnsemblPlants:GSMUA_Achr10T03540_001	UniProt:M0RF31
InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF127	TIGRFAMs:TIGR00840
TMHMM:TMhelix	UniParc:UPI0002967D31	SEG:seg	:	:	:

Description

Sodium/hydrogen exchanger 6 [Source:GMGC_GENE;Acc:GSMUA_Achr10G03540_001]

Coordinates

chr10:-:11536664..11545797

Molecular Weight (calculated)

55331.3 Da

IEP (calculated)

7.717

GRAVY (calculated)

0.668

Length

504 amino acids

Sequence
(BLAST)

001: MLKLNATASP PGSTPSEEPG EDQQAAGVGI LLQISMLVLS FVVGHVLRRH KFYYLPEASV SLLIGLVVGG IANISHTEAN IRGWFNFHEE FFFLFLLPPI
101: ILYPMFNFQK KFHNKISGFS LAPKPFFSNF GAIITLAILG TFIASVVTGI LVYLGGLAYL MYKLPLVECL MFGALVSATD PVTVLSIFQE LGTDVNIYAL
201: VFGESVLNDA MAISLYRTMS SVRHSKSSGQ SLALAVLKFL ETFFGSMSSG VGVGFISALI SFMIKLSSAI HLFKYAGLDV DNLHNLESCL FVLFPYFSYM
301: LAEGLGLSGI VSILFTGIVM KQYTFSNLSK NSQHFAPAFF HLLSSLAETF VFIYMGFDIA MEQHSWSHIG FIFFSILFIG VARAAHVFSC AWLINMVRPA
401: SSQIPMRHQK ALWYIGLRGA MAFALALKSV HDLPDGHGKI ILTATTAIVV ITVLLIGGST GKMLEALEVI GDAYSGPYGE VSLRKYNIYY VWLSYFNSQC
501: LSLC

Best Arabidopsis Sequence Match ( AT1G79610.1 )
(BLAST)

001: MSSELQISPA IHDPQGQEKQ QQAAGVGILL QIMMLVLSFV LGHVLRRHKF YYLPEASASL LIGLIVGGLA NISNTETSIR TWFNFHDEFF FLFLLPPIIF
101: QSGFSLQPKP FFSNFGAIVT FSVLGTFVAS MVTGLLVYLG GVMFLMYRLP FVECLMFGSL ISATDPVTVL SIFQELGSDV NLYALVFGES VLNDAMAISL
201: YRTMSLVRSH SSGQNFFMVI VRFLETFVGS MSAGVGVGFT SALLFKYAGL DVDNLQNLEC CLFVLFPYFS YMLAEGLSLS GIVSILFTGI VMKHYTYSNL
301: SANSQRFVSA FFHLISSLAE TFVFIYMGFD IAMEKHSWSH LGFIFFSILF IVIARAANVF GCGYLVNLAR PAHRKIPMTH QKALWYSGLR GAMAFALALQ
401: SVHDLPEGHG QTIFTATTAI VVLTVLLIGG STGTMLEALE VVGDSHDTSL GDGFEVVNSR YMTSYDDEDT PPGSGFRTKL REFHKSAASF TELDRNYLTP
501: FFTSNNGDYD DEGNMEQHHE ERIPFTRRGN LNNRG

Arabidopsis Description

NHX6Sodium/hydrogen exchanger 6 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWU6]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.