Factsheet for TraesCS4B01G125700.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, vacuole

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plasma membrane, vacuole
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G147600.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	99.41	94.08
TraesCS4A01G145300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	98.83	93.7
EES10186	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	86.13	81.52
Zm00001d048732_P005	Maize	plasma membrane	86.72	81.32
Os11t0648000-01	Rice	plasma membrane	85.94	80.73
HORVU4Hr1G033760.1	Barley	mitochondrion, plastid	97.46	77.36
GSMUA_Achr8P06790_001	Banana	plasma membrane	71.48	68.03
VIT_05s0020g01960.t01	Wine grape	plasma membrane	71.68	67.84
GSMUA_Achr3P23840_001	Banana	plasma membrane	71.09	67.78
Solyc01g067710.2.1	Tomato	plasma membrane	70.7	67.41
PGSC0003DMT400027658	Potato	plasma membrane	70.51	67.23
KRH02192	Soybean	plasma membrane	68.75	65.67
VIT_07s0104g01280.t01	Wine grape	plasma membrane	63.87	65.53
TraesCS1B01G112700.1	Wheat	plasma membrane	69.34	65.02
PGSC0003DMT400056556	Potato	golgi, plasma membrane	37.89	63.4
GSMUA_Achr2P01560_001	Banana	plasma membrane	66.21	63.01
GSMUA_Achr6P20250_001	Banana	plasma membrane	68.55	61.26
Solyc06g008820.2.1	Tomato	plasma membrane	62.89	60.3
AT3G06370.3	Thale cress	plasma membrane	64.65	59.96
CDY24699	Canola	plasma membrane	64.06	58.78
CDY05257	Canola	plasma membrane	64.26	58.75
Bra020755.1-P	Field mustard	plasma membrane	61.72	58.52
KRH50930	Soybean	mitochondrion	68.55	55.71
PGSC0003DMT400056555	Potato	plasma membrane	27.15	55.16
TraesCS2B01G141900.1	Wheat	plasma membrane	63.28	54.18
TraesCS7B01G191300.1	Wheat	plasma membrane	55.08	53.51
Zm00001d028330_P048	Maize	plasma membrane	53.71	50.93
Zm00001d048459_P007	Maize	plasma membrane	33.98	36.33
Zm00001d026118_P021	Maize	nucleus, peroxisome, plasma membrane	46.88	34.09
Zm00001d025052_P007	Maize	plasma membrane	30.86	30.38
Zm00001d021844_P003	Maize	mitochondrion	49.41	26.94
TraesCS5B01G259100.2	Wheat	plasma membrane	25.98	25.48
TraesCS5B01G173800.1	Wheat	plasma membrane	26.56	25.47
TraesCS7B01G149100.1	Wheat	plasma membrane	26.56	25.33
Zm00001d003728_P056	Maize	cytosol, plasma membrane, vacuole	32.42	21.07

Protein Annotations

EnsemblPlants:TraesCS4B01G125700.1	EnsemblPlantsGene:TraesCS4B01G125700	Gene3D:1.20.1530.20	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0006810	GO:GO:0006812	GO:GO:0008150	GO:GO:0015299	GO:GO:0016020	GO:GO:0016021
GO:GO:0055085	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	InterPro:IPR038770	InterPro:Na+/solute_symporter_sf	PANTHER:PTHR10110
PANTHER:PTHR10110:SF154	PFAM:PF00999	SEG:seg	TMHMM:TMhelix	MapMan:24.2.8.1.1	:

Description

No Description!

Coordinates

chr4B:-:156527332..156533781

Molecular Weight (calculated)

55974.9 Da

IEP (calculated)

7.321

GRAVY (calculated)

0.542

Length

512 amino acids

Sequence
(BLAST)

001: MGLGLGDPPA DYGSIMAVGL FVALMCICII VGHLLEENRW MNESTTALLL GLGAGTVILF ASSGKNSRLM VFSEDLFFIY LLPPIIFNAG IISLGAMGLI
101: SRLNIGSLEL GDYLALGAIF SATDSVCTLQ VLSQDETPFL YSLVFGEGVV NDATSVVLFN AIQNFDLGNF SSLKFLQFIG NFLYLFGAST FLGVASGLLS
201: AYVIKKLYFG RHSTDREVAI MMLMAYLSYM LAELLDLSGI LTVFFCGIVM SHYTWHNVTE SSRVTTKHAF ATLSFISETF LFLYVGMDAL DIEKWKIVSE
301: TYSPMKSIAL SSIILALVLV ARAAFVFPLS YLSNLTKQTP GEKISIRQQV IIWWAGLMRG AVSIALAYNK FAKSGHTQLP SNAIMITSTI IIVLFSTIVF
401: GLLTKPLIRL LIPARHLTRE VSALSEPSSP KSVLEQLPGN GPETDLENAV SIRRPTSLRM LLASPTRSVH HYWRKFDNAF MRPVFGGRGF VPFVPGSPTE
501: SNVPLLAHGS EN

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.