Factsheet for TraesCS1A01G102300.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plasma membrane 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	secretory
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G093900.1	Wheat	plasma membrane	99.82	99.82
TraesCS1B01G112700.1	Wheat	plasma membrane	99.08	99.08
HORVU1Hr1G020360.2	Barley	plasma membrane	97.07	97.07
Os05t0148600-01	Rice	plasma membrane	86.26	86.58
KXG21297	Sorghum	plasma membrane	86.26	86.26
Zm00001d024832_P002	Maize	plasma membrane	85.9	83.9
GSMUA_Achr8P06790_001	Banana	plasma membrane	69.96	71.0
GSMUA_Achr3P23840_001	Banana	plasma membrane	69.78	70.95
TraesCS4A01G145300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	69.41	70.19
Solyc01g067710.2.1	Tomato	plasma membrane	68.31	69.46
PGSC0003DMT400027658	Potato	plasma membrane	68.13	69.27
KRH02192	Soybean	plasma membrane	67.4	68.66
VIT_05s0020g01960.t01	Wine grape	plasma membrane	67.95	68.58
VIT_07s0104g01280.t01	Wine grape	plasma membrane	62.27	68.14
TraesCS2A01G121000.1	Wheat	plasma membrane	66.67	67.66
PGSC0003DMT400056555	Potato	plasma membrane	30.95	67.06
GSMUA_Achr2P01560_001	Banana	plasma membrane	65.2	66.17
GSMUA_Achr6P20250_001	Banana	plasma membrane	68.31	65.1
Solyc06g008820.2.1	Tomato	plasma membrane	62.64	64.04
AT3G06370.3	Thale cress	plasma membrane	63.74	63.04
Bra020755.1-P	Field mustard	plasma membrane	60.62	61.3
CDY24699	Canola	plasma membrane	62.64	61.29
CDY05257	Canola	plasma membrane	62.64	61.07
PGSC0003DMT400056556	Potato	golgi, plasma membrane	33.7	60.13
KRH50930	Soybean	mitochondrion	66.85	57.94
TraesCS7A01G228400.1	Wheat	plasma membrane	55.13	57.12
TraesCS7A01G242300.1	Wheat	plasma membrane	26.56	26.75
TraesCS5A01G176100.3	Wheat	plasma membrane	25.64	26.17
TraesCS5A01G260700.1	Wheat	plasma membrane	25.27	25.94

Protein Annotations

Gene3D:1.20.1530.20	MapMan:24.2.8.1.1	InterPro:Cation/H_exchanger	InterPro:Cation/H_exchanger_CPA1	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0006812	GO:GO:0006814	GO:GO:0006885	GO:GO:0008150
GO:GO:0015299	GO:GO:0015385	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085	InterPro:IPR038770
InterPro:Na+/solute_symporter_sf	InterPro:NaH_exchanger	PFAM:PF00999	PRINTS:PR01084	PANTHER:PTHR10110	PANTHER:PTHR10110:SF116
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1A01G102300	EnsemblPlants:TraesCS1A01G102300.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr1A:-:98242810..98247584

Molecular Weight (calculated)

59707.9 Da

IEP (calculated)

8.138

GRAVY (calculated)

0.675

Length

546 amino acids

Sequence
(BLAST)

001: MGLDLGALAL KYTGLAVSDH DSIVAINIFI ALLCGCIVFG HLLEGNRWVN ESTTALVLGL ITGGVILICT KGVNSRILIF SEDIFFIYLL PPIIFNAGFQ
101: VKKKQFFRNF ATIILFGAAG TLISFVIITF GAMGLFSKLD VGPLELGDYL AIGAIFSATD SVCTLQVLNQ DEAPLLYSLV FGEGVVNDAT SVVLFNAIQN
201: IDINHFDVFV LLQFIGKFLY LFFTSTVLGV AAGLLSAYII KKLCFARHST DREVAIMILM AYLSYMLSML LDLSGILTVF FCGIVMSHYT WHNVTESSRV
301: TTKHTFATLS FIAEIFLFLY VGMDALDIDK WKLASSSPKK PIALSAVILG LVMVGRAAFV FPLSFLSNLS KKESHPKISF NQQVIIWWAG LMRGAVSIAL
401: AYNKFTTSGH TAVRVNAVMI TSTIIVVLFS TMVFGLLTKP LINLLIPPRP GTAADISSQS FLDPLTASLL GSDFDVGQLT PQTNLQYLLT MPTRSVHRVW
501: RKFDDKFMRP MFGGRGFVPF VPGSPIERSV HGPGLLGTVT EAEDRS

Best Arabidopsis Sequence Match ( AT3G05030.1 )
(BLAST)

001: MTMFASLTSK MLSVSTSDHA SVVSLNLFVA LLCACIVIGH LLEENRWMNE SITALLIGLG TGVVILLISR GKNSHLLVFS EDLFFIYLLP PIIFNAGFQV
101: KKKQFFRNFV TIMAFGAIGT VVSCTIISLG AIQFFKKLDI GTFDLGDFLA IGAIFAATDS VCTLQVLNQD ETPLLYSLVF GEGVVNDATS VVLFNAIQSF
201: DLTHLNHEAA FQFLGNFFYL FLLSTGLGVA TGLISAYVIK KLYFGRHSTD REVALMMLMA YLSYMLAELF ALSGILTVFF CGIVMSHYTW HNVTESSRIT
301: TKHAFATLSF LAETFIFLYV GMDALDIEKW RFVSDSPGTS VAVSSILMGL VMLGRAAFVF PLSFLSNLAK KHQSEKISIK QQVVIWWAGL MRGAVSMALA
401: YNKFTRSGHT ELRGNAIMIT STITVCLFST MVFGMLTKPL IRYLMPHQKA TTSTTSMLSD DSTPKSIHIP LLDGEQLDSF ELPGSHQDVP RPNSLRGFLM
501: RPTRTVHYYW RQFDDAFMRP VFGGRGFVPF VPGSPTERSS HDLSKP

Arabidopsis Description

NHX2Sodium/hydrogen exchanger [Source:UniProtKB/TrEMBL;Acc:A0A178VK10]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.