Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG30069 | Sorghum | cytosol, peroxisome, plasma membrane | 93.29 | 93.73 |
| TraesCS7D01G484000.1 | Wheat | cytosol, peroxisome, plastid | 34.05 | 34.89 |
| TraesCS7D01G483700.1 | Wheat | cytosol, mitochondrion | 32.61 | 30.43 |
| TraesCS7D01G484100.1 | Wheat | cytosol | 18.47 | 28.31 |
| TraesCS7A01G496900.1 | Wheat | cytosol | 19.66 | 28.18 |
| TraesCS7B01G400700.1 | Wheat | cytosol | 16.79 | 26.92 |
| Zm00001d016394_P001 | Maize | cytosol | 27.82 | 26.42 |
Protein Annotations
| EMBL:BT083671 | EnsemblPlants:Zm00001d015945_P001 | EnsemblPlants:Zm00001d015945_T001 | EnsemblPlantsGene:Zm00001d015945 | EntrezGene:100282169 | Gene3D:1.20.1280.50 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 |
| PANTHER:PTHR33207 | PANTHER:PTHR33207:SF22 | PFAM:PF12937 | ProteinID:AQK69779.1 | SEG:seg | SUPFAM:SSF81383 |
| UniParc:UPI0001A4BC47 | UniProt:C4IYM4 | MapMan:35.2 | : | : | : |
Description
Topless-related protein 2
Coordinates
chr5:+:133441549..133442802
Molecular Weight (calculated)
46230.0 Da
IEP (calculated)
6.925
GRAVY (calculated)
0.024
Length
417 amino acids
Sequence
(BLAST)
(BLAST)
001: MGMEIERPPQ PPPVAAAMAA AAAISTVLGD DDLLREILVR LGLPTSLLRA ALVCRRWLRH ASDPAFLRRF RDLNPPRLLG VYLSTSSGPA PRLRFLPIRP
101: VPELAAAARR AGSFFNAFKG SSAAVYDSRG GRLLVTTFDD RHDSTHQVCR PLSPGGDTTV VPPPPPPPPI QLNNDEECLI YHYGEFLRDD GDGRSYFCVV
201: MGFSELQTTV YLYELHNINW VVKASAAVLL ALLPPKPRVM LFDSANFYML SATNRILVCD FPSSSISVME LPNGVENKPG GCIMLSRGDS SGIFLIYVKE
301: FQLHIFHHRM GINYPSNWSL VDSVSLRQVC ANLDMARWPS VNGPSAGVKL CAVGDNAEFV LLEIFGTIVF LDITSRQAEK VYELTPEDKE LVSVRPLMLI
401: WPPVFPQLKD AYYDKKE
101: VPELAAAARR AGSFFNAFKG SSAAVYDSRG GRLLVTTFDD RHDSTHQVCR PLSPGGDTTV VPPPPPPPPI QLNNDEECLI YHYGEFLRDD GDGRSYFCVV
201: MGFSELQTTV YLYELHNINW VVKASAAVLL ALLPPKPRVM LFDSANFYML SATNRILVCD FPSSSISVME LPNGVENKPG GCIMLSRGDS SGIFLIYVKE
301: FQLHIFHHRM GINYPSNWSL VDSVSLRQVC ANLDMARWPS VNGPSAGVKL CAVGDNAEFV LLEIFGTIVF LDITSRQAEK VYELTPEDKE LVSVRPLMLI
401: WPPVFPQLKD AYYDKKE
001: MSKFLPEELA IEILVRLSMK DLARFRCVCK TWRDLINDPG FTETYRDMSP AKFVSFYDKN FYMLDVEGKH PVITNKLDFP LDQSMIDEST CVLHCDGTLC
101: VTLKNHTLMV WNPFSKQFKI VPNPGIYQDS NILGFGYDPV HDDYKVVTFI DRLDVSTAHV FEFRTGSWGE SLRISYPDWH YRDRRGTFLD QYLYWIAYRS
201: SADRFILCFN LSTHEYRKLP LPVYNQGVTS SWLGVTSQKL CITEYEMCKK EIRISVMEKT GSWSKIISLS MSSFISVQDR IYDYQVEFVS FTRKNDLVVT
301: FTGYNDHFEM EPEERTKKKM FLYKTGNERS EEVRFCNPLA GLRFLCECVE TLKIVNRIFI
101: VTLKNHTLMV WNPFSKQFKI VPNPGIYQDS NILGFGYDPV HDDYKVVTFI DRLDVSTAHV FEFRTGSWGE SLRISYPDWH YRDRRGTFLD QYLYWIAYRS
201: SADRFILCFN LSTHEYRKLP LPVYNQGVTS SWLGVTSQKL CITEYEMCKK EIRISVMEKT GSWSKIISLS MSSFISVQDR IYDYQVEFVS FTRKNDLVVT
301: FTGYNDHFEM EPEERTKKKM FLYKTGNERS EEVRFCNPLA GLRFLCECVE TLKIVNRIFI
Arabidopsis Description
Putative F-box protein At3g16210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.