Factsheet for TraesCS7D01G484000.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G484100.1	Wheat	cytosol	59.46	88.97
TraesCS7B01G400700.1	Wheat	cytosol	35.87	56.15
TraesCS7D01G483700.1	Wheat	cytosol, mitochondrion	59.71	54.36
TraesCS3D01G456400.1	Wheat	cytosol, plastid	14.99	39.87
TraesCS5D01G363300.1	Wheat	cytosol, nucleus, peroxisome	36.12	37.6
TraesCS6D01G055300.1	Wheat	cytosol	37.1	37.56
TraesCS6D01G027300.1	Wheat	cytosol	33.66	37.53
TraesCS6D01G023200.1	Wheat	cytosol	36.61	37.25
TraesCS6D01G027100.1	Wheat	cytosol	35.63	36.8
TraesCS6D01G080600.1	Wheat	cytosol	21.13	36.13
TraesCS6D01G027200.1	Wheat	cytosol	34.64	35.79
TraesCS3D01G449700.1	Wheat	cytosol	35.63	35.63
TraesCS3D01G449600.1	Wheat	cytosol	34.4	34.91
KXG30069	Sorghum	cytosol, peroxisome, plasma membrane	35.38	34.7
TraesCS3D01G449500.1	Wheat	cytosol	35.87	34.27
Zm00001d015945_P001	Maize	cytosol	34.89	34.05
TraesCS3D01G457000.1	Wheat	plasma membrane	34.15	33.99
TraesCS3D01G457100.1	Wheat	cytosol	34.89	33.81
TraesCS6D01G027500.1	Wheat	cytosol	36.36	33.71
TraesCS3D01G110900.2	Wheat	cytosol	35.38	33.57
TraesCS3D01G455200.1	Wheat	cytosol	33.66	33.5
TraesCS5D01G497500.1	Wheat	cytosol	19.16	33.19
TraesCS6D01G069200.1	Wheat	cytosol	25.31	33.01
TraesCS3D01G455400.1	Wheat	cytosol, peroxisome, plastid	33.17	32.45
TraesCS5D01G363100.1	Wheat	cytosol	36.12	32.31
TraesCS1D01G402800.1	Wheat	cytosol, nucleus, peroxisome	27.52	32.28
TraesCS2D01G064400.1	Wheat	cytosol	34.89	31.84
TraesCS1D01G065900.1	Wheat	cytosol	35.38	31.37
TraesCS3D01G456600.1	Wheat	cytosol	29.73	30.56
TraesCS3D01G456800.1	Wheat	cytosol	33.66	30.31
TraesCS2D01G057400.2	Wheat	cytosol	31.7	30.21
TraesCS3D01G455100.1	Wheat	cytosol	32.68	30.02
TraesCS3D01G456200.1	Wheat	cytosol	29.48	29.56
TraesCS3D01G449800.1	Wheat	cytosol, mitochondrion, plasma membrane	19.9	28.72
TraesCS6D01G044000.1	Wheat	cytosol	22.85	28.62
TraesCS6D01G080900.1	Wheat	cytosol	18.18	26.81
TraesCS6D01G082100.7	Wheat	cytosol	34.4	16.45

Protein Annotations

EnsemblPlants:TraesCS7D01G484000.1	EnsemblPlantsGene:TraesCS7D01G484000	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	PANTHER:PTHR33207	PANTHER:PTHR33207:SF22	SEG:seg	SUPFAM:SSF81383	MapMan:35.2

Description

No Description!

Coordinates

chr7D:-:594022717..594024528

Molecular Weight (calculated)

45685.5 Da

IEP (calculated)

6.002

GRAVY (calculated)

0.101

Length

407 amino acids

Sequence
(BLAST)

001: MEGKRAPAAA AAAISAVLDD DDLLGEILLR LAFPTSLVRA ALVCKRWLLH AAAPAFLRRF RGLHQPSLLG FYVVSTAIHP PRFVALPQPP ELADVVRRGS
101: FDLDSLGPDR FDLDCWNGLL LLSTFEMYPD RTMNPTRVRC PLYPARDTAI LPTVPITSIH HDGFTYHDRE ILVSGSGGQC LSYFCLAIMD KEQQTVVDVY
201: ALQQGTWTIY SSSVTEIPRI GLLLPSTLIG DTNKIYNVAF VNNSYKLILL DLVSASLSLV NFPEEVKGLS FELSLTDDSQ LHLIHVKGSQ LRIWLHRMDS
301: NGVSNWLLER TICLREICAN YRIPTCMFKD GSDSAFTRMH AVGVNAEFVF LEMEDVLYLF DIKSKAAKQV YKMTPEDNIL NSVIPFMMVW PPKFPAMKEM
401: QDPTELP

Best Arabidopsis Sequence Match ( AT5G03970.2 )
(BLAST)

001: MTSALSTHEV LNSNDTMCEI LILLPPETIY KLILVSKRWL EIIASPCFRH TYLAKWKPNF ELIGFFVCSS MYLGRRIDGT RRPRAEPSLP LLSTSSIGDE
101: IESSGILKKL GYYIDSADGL LLCGRHPKAY YLWDPSTQKQ QQLPRPRVHF EELCMSLISE DSPDQGFSYK VVRAECVAFP VNSTKVKVET FSSKTSTWSY
201: SELICLEPLS LSPWTPGRVI KGVVYWHARG GKIAIYDSNS EEKRIDVIKL PKTYDYDEQV LGETDDGSLQ YGWSNKSVME VWKLEKVGNV LEWNLLFKVN
301: FKAMWKMNQA VATRFSTWTK ETQLLALFNQ KSDLVYIRCD TQIFIYHTET KRVEVVQYQG RKSTLVWDFN KVVPYFRRTW PCSPLFENNA MMIDTPQCNA
401: SSAGSN

Arabidopsis Description

F-box protein At5g03970 [Source:UniProtKB/Swiss-Prot;Acc:Q94A64]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.