Factsheet for TraesCS6D01G027200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G027100.1	Wheat	cytosol	96.19	96.19
TraesCS6D01G027300.1	Wheat	cytosol	87.06	93.97
TraesCS6A01G023900.1	Wheat	cytosol	93.65	93.65
HORVU7Hr1G095850.1	Barley	cytosol	84.77	87.43
HORVU6Hr1G004080.1	Barley	cytosol	53.3	80.15
HORVU6Hr1G004190.1	Barley	extracellular	27.92	74.83
TraesCS6D01G023200.1	Wheat	cytosol	49.24	48.5
TraesCS5D01G363300.1	Wheat	cytosol, nucleus, peroxisome	45.43	45.78
TraesCS6D01G055300.1	Wheat	cytosol	46.45	45.52
TraesCS6D01G027500.1	Wheat	cytosol	48.98	43.96
TraesCS5D01G497500.1	Wheat	cytosol	25.89	43.4
TraesCS3D01G110900.2	Wheat	cytosol	46.7	42.89
TraesCS3D01G449600.1	Wheat	cytosol	42.89	42.14
TraesCS6D01G044000.1	Wheat	cytosol	34.52	41.85
TraesCS5D01G363100.1	Wheat	cytosol	47.21	40.88
TraesCS6D01G069200.1	Wheat	cytosol	31.98	40.38
TraesCS1D01G402800.1	Wheat	cytosol, nucleus, peroxisome	35.53	40.35
TraesCS2D01G057400.2	Wheat	cytosol	43.65	40.28
TraesCS3D01G449700.1	Wheat	cytosol	41.37	40.05
TraesCS6D01G080900.1	Wheat	cytosol	27.92	39.86
TraesCS3D01G449500.1	Wheat	cytosol	42.89	39.67
TraesCS3D01G449800.1	Wheat	cytosol, mitochondrion, plasma membrane	28.17	39.36
TraesCS1D01G065900.1	Wheat	cytosol	45.69	39.22
EES04945	Sorghum	cytosol	39.09	36.67
TraesCS2D01G064400.1	Wheat	cytosol	40.1	35.43
TraesCS7D01G484000.1	Wheat	cytosol, peroxisome, plastid	35.79	34.64
TraesCS6D01G080600.1	Wheat	cytosol	20.81	34.45
Os02t0288925-00	Rice	cytosol	35.79	33.25
TraesCS3D01G457000.1	Wheat	plasma membrane	32.99	31.78
TraesCS7D01G483700.1	Wheat	cytosol, mitochondrion	35.79	31.54
TraesCS3D01G455400.1	Wheat	cytosol, peroxisome, plastid	33.25	31.49
TraesCS3D01G455200.1	Wheat	cytosol	31.73	30.56
TraesCS3D01G457100.1	Wheat	cytosol	32.49	30.48
TraesCS7D01G484100.1	Wheat	cytosol	20.81	30.15
TraesCS3D01G456400.1	Wheat	cytosol, plastid	11.68	30.07
TraesCS3D01G456200.1	Wheat	cytosol	30.2	29.31
TraesCS3D01G456600.1	Wheat	cytosol	28.68	28.54
TraesCS3D01G455100.1	Wheat	cytosol	31.47	27.99
TraesCS3D01G456800.1	Wheat	cytosol	30.96	26.99
TraesCS6D01G082100.7	Wheat	cytosol	43.15	19.98

Protein Annotations

EnsemblPlants:TraesCS6D01G027200.1	EnsemblPlantsGene:TraesCS6D01G027200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
PANTHER:PTHR33207	PANTHER:PTHR33207:SF22	SEG:seg	SUPFAM:SSF81383	MapMan:35.2	:

Description

No Description!

Coordinates

chr6D:-:10343424..10345657

Molecular Weight (calculated)

45242.1 Da

IEP (calculated)

8.545

GRAVY (calculated)

-0.108

Length

394 amino acids

Sequence
(BLAST)

001: MAAISKVLED DDLLSEILIR TIFTTTLLNS ALVCTRWLAH ASNRAFLHRF REIHPPRLLG FYINKGQNTP HFIPILPQPR ELTAVIRRST SSLGSYQRVP
101: SVPTYILGCR NSNVLIRQHD KIGTTFAVQN VVCPERGMDI LPPFPRPQSP YLFDGTAYSR IMSKEEGNAL SYLYVLMHQT TDGKHRVYIY ILKHGIWRMN
201: HSLIIQQPPR PWSVLKSVLS NNKIYVPAGW SNIIVLDLAA SSFSIIELPE GMEYGERNTI LSQADDVAGV YLIHVKKFQL RIWLHNGYTW LLMDTIYLRE
301: MCADLSMADD NASLLINQAG DNAEFVFLDR GQCTFLLDIK RRTMHKVYEK EDGDKFFCEI HPLMMIWPPV FPALKDDPTR NAMLRLKIKD IDGH

Best Arabidopsis Sequence Match ( AT5G42350.1 )
(BLAST)

001: MMISEKPLGV EESIRQDLEV LTVSRRLVKS VSQKLKKKIH KTEVVEDEEI ARGAVNCLSI SVGCRVADTG EDFEDSSNKR WSSASEEGKG LMTICGTEET
101: RLDCFSYGVR ERFWKKNNRK YLADSGQDYR KHVYLPDDIL EMCLMRLPLT SLLNAHLVCK KWQSMANTQR FLQMRREGSF QTPWLFLFAA LKDGCSSGDI
201: HGYDVSQDKW HRIETDLLKG RFMYSVTSIH EEIYIVGGRS MDRNSFKSHR GILVFSPSIK AWRKIASMRH ARSLPIVGAT EVTSEFSTMQ TKQNRQDRRF
301: HLSRVGGESD VYEDPHRLSV RRQNRNSADQ NGTKSHRLIR QKLDRLNRNS SKRFVLIAIG GTGLFDEPLD SGEIYDSATN TWSEMQRLPM GFGVVSCGII
401: CNGIFYAYSE NDKLSGYDIE RGFWITIQTS PIPPRVHEFY PKLVSCNHRL FMLSVSWCDE GDGQIGRRNK AVRKLWELDL VYLTWTEVSV HPDAPMDWNA
501: TYVSDQNILM GIEMFKIFGQ VLSFFTVCDV LTEEASWRHV SRNQRSQKLN LSCTNKTIAL LHL

Arabidopsis Description

F-box/kelch-repeat protein At5g42350 [Source:UniProtKB/Swiss-Prot;Acc:Q9FII2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.