Factsheet for TraesCS6D01G082100.7

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G100500.1	Wheat	cytosol	92.83	96.46
TraesCS6B01G128500.1	Wheat	cytosol	44.54	91.11
TraesCS5D01G497500.1	Wheat	cytosol	20.68	74.89
TraesCSU01G071400.2	Wheat	cytosol	67.57	71.25
HORVU0Hr1G014790.1	Barley	endoplasmic reticulum, plasma membrane	52.17	69.05
HORVU6Hr1G002130.4	Barley	plastid	67.92	67.68
TraesCS2D01G057400.2	Wheat	cytosol	29.61	59.02
TraesCS5D01G363300.1	Wheat	cytosol, nucleus, peroxisome	23.97	52.17
TraesCS3D01G449500.1	Wheat	cytosol	24.21	48.36
TraesCS6D01G023200.1	Wheat	cytosol	22.56	48.0
TraesCS3D01G449700.1	Wheat	cytosol	22.8	47.67
TraesCS3D01G110900.2	Wheat	cytosol	23.62	46.85
TraesCS6D01G055300.1	Wheat	cytosol	21.97	46.52
TraesCS3D01G449600.1	Wheat	cytosol	21.62	45.89
TraesCS3D01G449800.1	Wheat	cytosol, mitochondrion, plasma membrane	15.16	45.74
TraesCS6D01G027300.1	Wheat	cytosol	19.27	44.93
TraesCS6D01G027500.1	Wheat	cytosol	22.44	43.51
TraesCS6D01G027200.1	Wheat	cytosol	19.98	43.15
TraesCS5D01G363100.1	Wheat	cytosol	23.03	43.08
TraesCS6D01G027100.1	Wheat	cytosol	19.86	42.89
TraesCS6D01G044000.1	Wheat	cytosol	15.51	40.62
TraesCS6D01G080600.1	Wheat	cytosol	11.28	40.34
TraesCS1D01G065900.1	Wheat	cytosol	21.74	40.3
TraesCS1D01G402800.1	Wheat	cytosol, nucleus, peroxisome	16.22	39.77
TraesCS6D01G069200.1	Wheat	cytosol	14.34	39.1
TraesCS6D01G080900.1	Wheat	cytosol	12.46	38.41
TraesCS2D01G064400.1	Wheat	cytosol	19.39	37.0
EES04945	Sorghum	cytosol	17.74	35.95
TraesCS3D01G456400.1	Wheat	cytosol, plastid	6.46	35.95
Os02t0288925-00	Rice	cytosol	17.74	35.61
TraesCS7D01G484000.1	Wheat	cytosol, peroxisome, plastid	16.45	34.4
TraesCS7D01G483700.1	Wheat	cytosol, mitochondrion	16.92	32.21
TraesCS3D01G457000.1	Wheat	plasma membrane	14.92	31.05
TraesCS3D01G455200.1	Wheat	cytosol	14.57	30.32
TraesCS7D01G484100.1	Wheat	cytosol	9.64	30.15
TraesCS3D01G455400.1	Wheat	cytosol, peroxisome, plastid	14.57	29.81
TraesCS3D01G457100.1	Wheat	cytosol	14.57	29.52
TraesCS3D01G456800.1	Wheat	cytosol	15.16	28.54
TraesCS3D01G456200.1	Wheat	cytosol	13.51	28.33
TraesCS3D01G455100.1	Wheat	cytosol	14.34	27.54
TraesCS3D01G456600.1	Wheat	cytosol	12.57	27.02

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:2.130.10.10	MapMan:35.1	ncoils:Coil	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001680	InterPro:IPR001810	InterPro:IPR015943
InterPro:IPR017986	PFAM:PF00400	PFAM:PF00646	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR44083	PANTHER:PTHR44083:SF3	SMART:SM00320	SUPFAM:SSF50978	SUPFAM:SSF81383	InterPro:Topless_fam
EnsemblPlantsGene:TraesCS6D01G082100	EnsemblPlants:TraesCS6D01G082100.7	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:47622026..47626447

Molecular Weight (calculated)

95854.7 Da

IEP (calculated)

6.622

GRAVY (calculated)

-0.227

Length

851 amino acids

Sequence
(BLAST)

001: MDQLSPSGPV PQPSWSLDII PTKVVCTLSQ GSNVTSMDFH PCHTLLLVGS ANGEFTIWEI GTRERLVSEP FQIWNMQACS AQFQCVVAKD PSMAVSQVTW
101: SPDGYMIGVA FTKHLIHLYA YEHQNKTREV VEIEAHSGEV NDIAFSQPNK QLCVVTCGDD KLIRVWDMHG QKIYSFEGHE APVYSICPHH IDDIQFIFST
201: SLDGKLKAWF YDNVGSRVDF DVPGKWCTTM LYSADGTRLF SCGTSKQGDS HLVEWNQSEG SVKRSYSGFR KKPSGVVQGV VQFDIARNHI LAAGEDNQIK
301: FWDVDNTNML ACIEAGGALP SFPRLRFNKE GNLLAVTTVD SGFKIIANND GLKSLLSFGN LPSEVFRSPY EASAMKVSGA PVVSGISPNI GRTDHLDRNY
401: PAKPSPILNG GDPASGSIDK KRRISEEKSD KGKPWDLKEV LNPQKFRLDT MLETDQASKV SKVLDDDDLL REIIIRVGFP TTLVRAALVC KRWYHHASEP
501: AFLRRFCERH PPCLLGFYVE DREDHKMASI RFFSLLNKPQ ELAAIIRSLL GYSWDAYRGA PANFLCSRNG RVFISLYDQV NRSKFTVGAH SLLCPERGLT
601: VVPPFPHVEI QDGYSRTMND LFSVEEVNDL SLLHVSVVSN MQRTKSTVHV HMWRHGDGVW RTYLTLDTDQ LLDPRREPKA VLANNKIYIA SAQSDIVVFD
701: LTASSISMFQ LPQGVEYGDR DTMLAQAQDA SGVYLIHAKK LQLHIWLHKG DNWFLVDTIC LREMVANMWI PGYRVEDESY APLRIKHVGD YAECIFLEMG
801: RCALQLDVKC MQLRKVYIMA EEEVCLGDIH PLKMIWPPIF PALKDNPARY D

Best Arabidopsis Sequence Match ( AT1G80490.1 )
(BLAST)

0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAL KHPRTPPSNS AVDYPSGDSD
0301: HVSKRTRPMG ISDEVSLGVN MLPMTFPGQA HGHNQTFKAP DDLPKTVART LSQGSSPMSM DFHPIKQTLL LVGTNVGDIG LWEVGSRERL VQKTFKVWDL
0401: SKCSMPLQAA LVKEPVVSVN RVIWSPDGSL FGVAYSRHIV QLYSYHGGED MRQHLEIDAH VGGVNDIAFS TPNKQLCVTT CGDDKTIKVW DAATGVKRYT
0501: FEGHEAPVYS ICPHYKENIQ FIFSTALDGK IKAWLYDNMG SRVDYEAPGR WCTTMAYSAD GTRLFSCGTS KDGESFIVEW NESEGAVKRT YQGFHKRSLG
0601: VVQFDTTKNR YLAAGDDFSI KFWDMDTIQL LTAIDADGGL QASPRIRFNK EGSLLAVSAN DNMIKVMANS DGLRLLHTVE NLSSESSKPA INSIPMVERP
0701: ASVVSIPGMN GDSRNMVDVK PVITEESNDK SKVWKLTEVG EPSQCRSLRL PENMRVTKIS RLIFTNSGNA ILALASNAIH LLWKWQRNDR NATGKATASL
0801: PPQQWQPASG ILMTNDVAET NPEEAVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMATF MPPPPAATFL AFHPQDNNII AIGMDDSTIQ IYNVRVDEVK
0901: SKLKGHSKRI TGLAFSNVLN VLVSSGADAQ LCVWNTDGWE KQKSKVLQIP QGRSTSSLSD TRVQFHQDQV HFLVVHETQL AIYETTKLEC MKQWPVRESA
1001: APITHATFSC DSQLIYTSFM DATICVFSSA NLRLRCRVNP SAYLPASLSN SNVHPLVIAA HPQESNMFAV GLSDGGVHIF EPLESEGKWG VAPPPENGSA
1101: SAVTATPSVG ASASDQPQR

Arabidopsis Description

TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.