Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 3
- vacuole 2
- plasma membrane 3
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU6Hr1G002130.4 | Barley | plastid | 95.18 | 71.66 |
| TraesCS6B01G128500.1 | Wheat | cytosol | 46.03 | 71.15 |
| TraesCSU01G071400.2 | Wheat | cytosol | 86.31 | 68.77 |
| TraesCS6A01G100500.1 | Wheat | cytosol | 68.9 | 54.09 |
| TraesCS6D01G082100.7 | Wheat | cytosol | 69.05 | 52.17 |
| HORVU7Hr1G095850.1 | Barley | cytosol | 28.3 | 47.64 |
| HORVU5Hr1G114130.1 | Barley | cytosol, nucleus, plastid | 66.41 | 47.34 |
| HORVU6Hr1G016700.2 | Barley | cytosol, peroxisome, plastid | 28.46 | 44.96 |
| HORVU6Hr1G018030.1 | Barley | cytosol | 28.46 | 41.97 |
| HORVU6Hr1G004190.1 | Barley | extracellular | 9.33 | 40.82 |
| HORVU6Hr1G004080.1 | Barley | cytosol | 16.49 | 40.46 |
| EES04945 | Sorghum | cytosol | 25.35 | 38.81 |
| Os02t0288925-00 | Rice | cytosol | 23.79 | 36.08 |
| HORVU3Hr1G099010.2 | Barley | cytosol | 18.51 | 28.54 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A287T4Z4 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:HORVU0Hr1G014790 |
| EnsemblPlants:HORVU0Hr1G014790.1 | InterPro:IPR001810 | InterPro:IPR015943 | PFAM:PF12937 | PANTHER:PTHR33207 | PANTHER:PTHR33207:SF22 |
| SUPFAM:SSF50978 | SUPFAM:SSF81383 | TMHMM:TMhelix | UniParc:UPI000B460C24 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:81723108..81725191
Molecular Weight (calculated)
72988.0 Da
IEP (calculated)
6.935
GRAVY (calculated)
-0.091
Length
643 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHMRVMPVF SILCSERDLP LHCFLKHVRL YLVYLYMVLS CSLQFIFSIS FDGKIKAWLY DNMGSRVEYD APGKWCTAML YSADGTRLFS CGTSKEGDSH
101: LVEWKQSEGS IERTYSGFRK TPSSVLHGVV QFDTTHNHIL AAGEENRIKF WDADNTNMLT CIEADGGLPS FPRLRFNKEG NLLAVTTVEN GFKILANTDG
201: LRSLLAFGVG HVATMSETRD QARKVRSILP EESTPCIGVS TNDSDVMAAC GGKVSKVLDD DDLLREIIVR VGFSTTLVRA ALVCKRWYHH ASEPAFLYHF
301: HERHRSRLLG FYLEDKEGHK VASIRFFPML PQPPELAAVI RRVVSYSLES YRGAPAKFLC SWSSRVLISL HNQNNHNKFT VGVHNLLYPE RGLVVVPPCP
401: HVQIQDVFYR NLLPVDEVDG LSYLHVSVVS NIQITTSTVH VHILRHDDGV WRMYHTFDID QLLDLRQEPK AVLANNKIYI ASAQKDIVVL DLNASSISTV
501: QLPQGVEYGD RDIMLARADD ASGVYVIHVK KIQLHIWLHK GDNWLLVDTI CLRDKVANLR IPGCEVEDEH NAPLQIHHVG DYAEFVFLEM GRCALHLDVK
601: SMQLRKVYDM TEEELQLGDI HPLMMIWPPK FPVLKDNPAR FAF
101: LVEWKQSEGS IERTYSGFRK TPSSVLHGVV QFDTTHNHIL AAGEENRIKF WDADNTNMLT CIEADGGLPS FPRLRFNKEG NLLAVTTVEN GFKILANTDG
201: LRSLLAFGVG HVATMSETRD QARKVRSILP EESTPCIGVS TNDSDVMAAC GGKVSKVLDD DDLLREIIVR VGFSTTLVRA ALVCKRWYHH ASEPAFLYHF
301: HERHRSRLLG FYLEDKEGHK VASIRFFPML PQPPELAAVI RRVVSYSLES YRGAPAKFLC SWSSRVLISL HNQNNHNKFT VGVHNLLYPE RGLVVVPPCP
401: HVQIQDVFYR NLLPVDEVDG LSYLHVSVVS NIQITTSTVH VHILRHDDGV WRMYHTFDID QLLDLRQEPK AVLANNKIYI ASAQKDIVVL DLNASSISTV
501: QLPQGVEYGD RDIMLARADD ASGVYVIHVK KIQLHIWLHK GDNWLLVDTI CLRDKVANLR IPGCEVEDEH NAPLQIHHVG DYAEFVFLEM GRCALHLDVK
601: SMQLRKVYDM TEEELQLGDI HPLMMIWPPK FPVLKDNPAR FAF
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDKHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRNSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCGPPNGA RAPSPVNNPL LGGIPKAGGF PPLGAHGPFQ PTASPVPTPL AGWMSSPSSV PHPAVSAGAI ALGGPSIPAA LKHPRTPPTN ASLDYPSADS
0301: EHVSKRTRPM GISDEVNLGV NMLPMSFSGQ AHGHSPAFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDISF STPNKQLCVI TCGDDKTIKV WDAATGVKRH
0501: TFEGHEAPVY SVCPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYDAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDAVQ LLTAIDGDGG LQASPRIRFN KEGSLLAVSG NENVIKIMAN SDGLRLLHTF ENISSESSKP AINSIAAAAA
0701: AAATSAGHAD RSANVVSIQG MNGDSRNMVD VKPVITEESN DKSKIWKLTE VSEPSQCRSL RLPENLRVAK ISRLIFTNSG NAILALASNA IHLLWKWQRN
0801: ERNATGKATA SLPPQQWQPA SGILMTNDVA ETNPEEAVPC FALSKNDSYV MSASGGKISL FNMMTFKTMA TFMPPPPAAT FLAFHPQDNN IIAIGMDDST
0901: IQIYNVRVDE VKSKLKGHSK RITGLAFSNV LNVLVSSGAD AQLCVWNTDG WEKQRSKVLP LPQGRPNSAP SDTRVQFHQD QAHFLVVHET QLAIYETTKL
1001: ECMKQWAVRE SLAPITHATF SCDSQLVYAS FMDATVCVFS SANLRLRCRV NPSAYLPASL SNSNVHPLVI AAHPQEPNMF AVGLSDGGVH IFEPLESEGK
1101: WGVAPPAENG SASGAPTAPS VGASASDQPQ R
Arabidopsis Description
TPLProtein TOPLESS [Source:UniProtKB/Swiss-Prot;Acc:Q94AI7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.