Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G014790.1 | Barley | endoplasmic reticulum, plasma membrane | 68.77 | 86.31 |
| HORVU6Hr1G002130.4 | Barley | plastid | 89.1 | 84.19 |
| TraesCS6A01G100500.1 | Wheat | cytosol | 71.62 | 70.57 |
| TraesCS6B01G128500.1 | Wheat | cytosol | 35.44 | 68.75 |
| TraesCS6D01G082100.7 | Wheat | cytosol | 71.25 | 67.57 |
| TraesCSU01G034900.1 | Wheat | cytosol | 21.81 | 43.14 |
| EES04945 | Sorghum | cytosol | 19.95 | 38.33 |
| Os02t0288925-00 | Rice | cytosol | 19.08 | 36.32 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR001680 | InterPro:IPR001810 | InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 |
| PFAM:PF00646 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF3 |
| SMART:SM00320 | SUPFAM:SSF50978 | SUPFAM:SSF81383 | InterPro:Topless_fam | EnsemblPlantsGene:TraesCSU01G071400 | EnsemblPlants:TraesCSU01G071400.2 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | SEG:seg |
Description
No Description!
Coordinates
chrUn:+:62646888..62651539
Molecular Weight (calculated)
90911.9 Da
IEP (calculated)
6.571
GRAVY (calculated)
-0.148
Length
807 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQPSSSRYG IDEVTYPAPI TEPSRSLDYL PTRVACTLSQ GSNVTSMDFH PSHHTLLLVG SANGEFTLWE IGMHERLVSK PFKVWDMQAC SAQYQSVMAK
101: DSSVAVSRVT WSPYGDLIEV AFTKHLIHLH AYQHPNETRQ VVEIEAHSGG VNDIAFSRPN KQLCVVTCGD DKLIRVWDMH GQKLYSFEGH EAPVYSIFPH
201: HMDAIHFIFS ISFDGKIKAW LYDNMSSRVE YDAPGKWCTA MLYSTDGTRL FSCGTSKEGD SHLVEWKQSE GSIERTYSGF RKTSSVVHGV VQFDTAHNRI
301: LAAGEENQIK FWDVDNTNML TCIEADGGLP RFPRLRFNKE GNLLAVTTLE NGFKILANTD GLRSLLAFGR QPFNVFHVAT MPETRDQARK VQSIFPEESA
401: PCIALSTNDS NVIAACGGKL SKVLDDDDLL REIIVRVGFS TTLVRAALVC KRWYQHASEP AFLCCFRERH RSRLLGFYLV DKEGSKVASI RFFPMLPQPP
501: ELAVVIHRVV SYSLESYRGA PAKFLCSQSS RVLISLYNQN NRNKFTVGVH NPLCPERGLV VVPPCPHVQI QDVYYRNLLS VGEVDGLSYL HVSVVSNIQL
601: TTSTVHVHML RHGDGVWCMY HTLDTDQLLD LRQEPKAVFA DNKIYIASAQ KDIVVLDLNA SSISTVQLPQ GVEYGDRDIM LAKADDASGV YVIHVKKIQL
701: HIWLHKGGNW LLIDTICLRD MVANLRIPGC EVEDEHNAPL QIHHVGDYAE FVFLEMGRCT LHLDVKSMQL HKVYDMTEEE LQLGDIHPLM MIWPPTFPVV
801: KDNLNAM
101: DSSVAVSRVT WSPYGDLIEV AFTKHLIHLH AYQHPNETRQ VVEIEAHSGG VNDIAFSRPN KQLCVVTCGD DKLIRVWDMH GQKLYSFEGH EAPVYSIFPH
201: HMDAIHFIFS ISFDGKIKAW LYDNMSSRVE YDAPGKWCTA MLYSTDGTRL FSCGTSKEGD SHLVEWKQSE GSIERTYSGF RKTSSVVHGV VQFDTAHNRI
301: LAAGEENQIK FWDVDNTNML TCIEADGGLP RFPRLRFNKE GNLLAVTTLE NGFKILANTD GLRSLLAFGR QPFNVFHVAT MPETRDQARK VQSIFPEESA
401: PCIALSTNDS NVIAACGGKL SKVLDDDDLL REIIVRVGFS TTLVRAALVC KRWYQHASEP AFLCCFRERH RSRLLGFYLV DKEGSKVASI RFFPMLPQPP
501: ELAVVIHRVV SYSLESYRGA PAKFLCSQSS RVLISLYNQN NRNKFTVGVH NPLCPERGLV VVPPCPHVQI QDVYYRNLLS VGEVDGLSYL HVSVVSNIQL
601: TTSTVHVHML RHGDGVWCMY HTLDTDQLLD LRQEPKAVFA DNKIYIASAQ KDIVVLDLNA SSISTVQLPQ GVEYGDRDIM LAKADDASGV YVIHVKKIQL
701: HIWLHKGGNW LLIDTICLRD MVANLRIPGC EVEDEHNAPL QIHHVGDYAE FVFLEMGRCT LHLDVKSMQL HKVYDMTEEE LQLGDIHPLM MIWPPTFPVV
801: KDNLNAM
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
Arabidopsis Description
TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.