Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU0Hr1G014790.1 | Barley | endoplasmic reticulum, plasma membrane | 71.66 | 95.18 |
| TraesCSU01G071400.2 | Wheat | cytosol | 84.19 | 89.1 |
| TraesCS6A01G100500.1 | Wheat | cytosol | 67.56 | 70.45 |
| TraesCS6B01G128500.1 | Wheat | cytosol | 34.31 | 70.43 |
| TraesCS6D01G082100.7 | Wheat | cytosol | 67.68 | 67.92 |
| HORVU5Hr1G114130.1 | Barley | cytosol, nucleus, plastid | 68.38 | 64.75 |
| HORVU7Hr1G095850.1 | Barley | cytosol | 21.31 | 47.64 |
| HORVU6Hr1G016700.2 | Barley | cytosol, peroxisome, plastid | 22.01 | 46.19 |
| HORVU6Hr1G018030.1 | Barley | cytosol | 21.9 | 42.89 |
| HORVU6Hr1G004190.1 | Barley | extracellular | 7.03 | 40.82 |
| HORVU6Hr1G004080.1 | Barley | cytosol | 12.41 | 40.46 |
| EES04945 | Sorghum | cytosol | 19.2 | 39.05 |
| Os02t0288925-00 | Rice | cytosol | 18.03 | 36.32 |
| HORVU3Hr1G099010.2 | Barley | cytosol | 14.29 | 29.26 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | UniProt:A0A287T4Y9 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:HORVU6Hr1G002130 | EnsemblPlants:HORVU6Hr1G002130.4 | InterPro:IPR001680 | InterPro:IPR001810 |
| InterPro:IPR015943 | InterPro:IPR017986 | PFAM:PF00400 | PFAM:PF12937 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR44083 | PANTHER:PTHR44083:SF3 | SMART:SM00320 | SUPFAM:SSF50978 | SUPFAM:SSF81383 |
| InterPro:Topless_fam | UniParc:UPI000B479D13 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:6017177..6023449
Molecular Weight (calculated)
95920.7 Da
IEP (calculated)
7.070
GRAVY (calculated)
-0.261
Length
854 amino acids
Sequence
(BLAST)
(BLAST)
001: KTQKKRKKSP QCSHSTQRRR KGGAAPPATS IGPGPGPGSR PRFEESGQLM EQPSSSQHGI AEDIYLAPIP QPSQSLHYLP TRVVCTLSQG SNVISMDFHP
101: SHHTLLLVGS ANGEFTLWEI ATHEKLLSKP FKVWDMQACS TQYQSVMAKD SSIAVNRVTW SPDGDLIGVA FTKHLIHLHA YQHPNEARQV IEIEAHSGGV
201: NDIAFSRPNK QLYVVTCGDD KLIRVWDMHG QKIYSFEGHE APVYSICPHH MENIHFIFSI SFDGKIKAWL YDNMGSRVEY DAPGKWCTAM LYSADGTRLF
301: SCGTSKEGDS HLVEWKQSEG SIERTYSGFR KTPSSVLHGV VQFDTTHNHI LAAGEENRIK FWDADNTNML TCIEADGGLP SFPRLRFNKE GNLLAVTTVE
401: NGFKILANTD GLRSLLAFGV GHVATMSETR DQARKVRSIL PEESTPCIGV STNDSDVMAA CGGKVSKVLD DDDLLREIIV RVGFSTTLVR AALVCKRWYH
501: HASEPAFLYH FHERHRSRLL GFYLEDKEGH KVASIRFFPM LPQPPELAAV IRRVVSYSLE SYRGAPAKFL CSWSSRVLIS LHNQNNHNKF TVGVHNLLYP
601: ERGLVVVPPC PHVQIQDVFY RNLLPVDEVD GLSYLHVSVV SNIQITTSTV HVHILRHDDG VWRMYHTFDI DQLLDLRQEP KAVLANNKIY IASAQKDIVV
701: LDLNASSIST VQLPQGVEYG DRDIMLARAD DASGVYVIHV KKIQLHIWLH KGDNWLLVDT ICLRDKVANL RIPGCEVEDE HNAPLQIHHV GDYAEFVFLE
801: MGRCALHLDV KSMQLRKVYD MTEEELQLGD IHPLMMIWPP KFPVLKDNPA SNAV
101: SHHTLLLVGS ANGEFTLWEI ATHEKLLSKP FKVWDMQACS TQYQSVMAKD SSIAVNRVTW SPDGDLIGVA FTKHLIHLHA YQHPNEARQV IEIEAHSGGV
201: NDIAFSRPNK QLYVVTCGDD KLIRVWDMHG QKIYSFEGHE APVYSICPHH MENIHFIFSI SFDGKIKAWL YDNMGSRVEY DAPGKWCTAM LYSADGTRLF
301: SCGTSKEGDS HLVEWKQSEG SIERTYSGFR KTPSSVLHGV VQFDTTHNHI LAAGEENRIK FWDADNTNML TCIEADGGLP SFPRLRFNKE GNLLAVTTVE
401: NGFKILANTD GLRSLLAFGV GHVATMSETR DQARKVRSIL PEESTPCIGV STNDSDVMAA CGGKVSKVLD DDDLLREIIV RVGFSTTLVR AALVCKRWYH
501: HASEPAFLYH FHERHRSRLL GFYLEDKEGH KVASIRFFPM LPQPPELAAV IRRVVSYSLE SYRGAPAKFL CSWSSRVLIS LHNQNNHNKF TVGVHNLLYP
601: ERGLVVVPPC PHVQIQDVFY RNLLPVDEVD GLSYLHVSVV SNIQITTSTV HVHILRHDDG VWRMYHTFDI DQLLDLRQEP KAVLANNKIY IASAQKDIVV
701: LDLNASSIST VQLPQGVEYG DRDIMLARAD DASGVYVIHV KKIQLHIWLH KGDNWLLVDT ICLRDKVANL RIPGCEVEDE HNAPLQIHHV GDYAEFVFLE
801: MGRCALHLDV KSMQLRKVYD MTEEELQLGD IHPLMMIWPP KFPVLKDNPA SNAV
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAL KHPRTPPSNS AVDYPSGDSD
0301: HVSKRTRPMG ISDEVSLGVN MLPMTFPGQA HGHNQTFKAP DDLPKTVART LSQGSSPMSM DFHPIKQTLL LVGTNVGDIG LWEVGSRERL VQKTFKVWDL
0401: SKCSMPLQAA LVKEPVVSVN RVIWSPDGSL FGVAYSRHIV QLYSYHGGED MRQHLEIDAH VGGVNDIAFS TPNKQLCVTT CGDDKTIKVW DAATGVKRYT
0501: FEGHEAPVYS ICPHYKENIQ FIFSTALDGK IKAWLYDNMG SRVDYEAPGR WCTTMAYSAD GTRLFSCGTS KDGESFIVEW NESEGAVKRT YQGFHKRSLG
0601: VVQFDTTKNR YLAAGDDFSI KFWDMDTIQL LTAIDADGGL QASPRIRFNK EGSLLAVSAN DNMIKVMANS DGLRLLHTVE NLSSESSKPA INSIPMVERP
0701: ASVVSIPGMN GDSRNMVDVK PVITEESNDK SKVWKLTEVG EPSQCRSLRL PENMRVTKIS RLIFTNSGNA ILALASNAIH LLWKWQRNDR NATGKATASL
0801: PPQQWQPASG ILMTNDVAET NPEEAVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMATF MPPPPAATFL AFHPQDNNII AIGMDDSTIQ IYNVRVDEVK
0901: SKLKGHSKRI TGLAFSNVLN VLVSSGADAQ LCVWNTDGWE KQKSKVLQIP QGRSTSSLSD TRVQFHQDQV HFLVVHETQL AIYETTKLEC MKQWPVRESA
1001: APITHATFSC DSQLIYTSFM DATICVFSSA NLRLRCRVNP SAYLPASLSN SNVHPLVIAA HPQESNMFAV GLSDGGVHIF EPLESEGKWG VAPPPENGSA
1101: SAVTATPSVG ASASDQPQR
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAL KHPRTPPSNS AVDYPSGDSD
0301: HVSKRTRPMG ISDEVSLGVN MLPMTFPGQA HGHNQTFKAP DDLPKTVART LSQGSSPMSM DFHPIKQTLL LVGTNVGDIG LWEVGSRERL VQKTFKVWDL
0401: SKCSMPLQAA LVKEPVVSVN RVIWSPDGSL FGVAYSRHIV QLYSYHGGED MRQHLEIDAH VGGVNDIAFS TPNKQLCVTT CGDDKTIKVW DAATGVKRYT
0501: FEGHEAPVYS ICPHYKENIQ FIFSTALDGK IKAWLYDNMG SRVDYEAPGR WCTTMAYSAD GTRLFSCGTS KDGESFIVEW NESEGAVKRT YQGFHKRSLG
0601: VVQFDTTKNR YLAAGDDFSI KFWDMDTIQL LTAIDADGGL QASPRIRFNK EGSLLAVSAN DNMIKVMANS DGLRLLHTVE NLSSESSKPA INSIPMVERP
0701: ASVVSIPGMN GDSRNMVDVK PVITEESNDK SKVWKLTEVG EPSQCRSLRL PENMRVTKIS RLIFTNSGNA ILALASNAIH LLWKWQRNDR NATGKATASL
0801: PPQQWQPASG ILMTNDVAET NPEEAVPCFA LSKNDSYVMS ASGGKISLFN MMTFKTMATF MPPPPAATFL AFHPQDNNII AIGMDDSTIQ IYNVRVDEVK
0901: SKLKGHSKRI TGLAFSNVLN VLVSSGADAQ LCVWNTDGWE KQKSKVLQIP QGRSTSSLSD TRVQFHQDQV HFLVVHETQL AIYETTKLEC MKQWPVRESA
1001: APITHATFSC DSQLIYTSFM DATICVFSSA NLRLRCRVNP SAYLPASLSN SNVHPLVIAA HPQESNMFAV GLSDGGVHIF EPLESEGKWG VAPPPENGSA
1101: SAVTATPSVG ASASDQPQR
Arabidopsis Description
TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.