Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G082100.7 | Wheat | cytosol | 96.46 | 92.83 |
| TraesCS6B01G128500.1 | Wheat | cytosol | 46.03 | 90.62 |
| TraesCSU01G071400.2 | Wheat | cytosol | 70.57 | 71.62 |
| HORVU0Hr1G014790.1 | Barley | endoplasmic reticulum, plasma membrane | 54.09 | 68.9 |
| HORVU6Hr1G002130.4 | Barley | plastid | 70.45 | 67.56 |
| TraesCS2A01G058400.1 | Wheat | cytosol | 27.23 | 59.31 |
| TraesCS3A01G456400.1 | Wheat | cytosol | 15.26 | 53.19 |
| TraesCS3A01G428600.1 | Wheat | cytosol | 20.63 | 49.27 |
| TraesCS3A01G109100.1 | Wheat | cytosol | 23.93 | 46.45 |
| TraesCS3A01G456500.1 | Wheat | cytosol | 22.22 | 46.43 |
| TraesCS6A01G047800.1 | Wheat | cytosol | 22.71 | 46.38 |
| TraesCS1A01G393700.1 | Wheat | cytosol | 22.1 | 42.79 |
| TraesCS6A01G010800.1 | Wheat | cytosol | 22.59 | 42.53 |
| TraesCS6A01G023800.1 | Wheat | cytosol | 20.15 | 42.09 |
| TraesCS6A01G100400.1 | Wheat | cytosol | 22.34 | 42.07 |
| TraesCS6A01G023900.1 | Wheat | cytosol | 20.02 | 41.62 |
| TraesCS2A01G066000.1 | Wheat | cytosol | 20.76 | 38.9 |
| EES04945 | Sorghum | cytosol | 18.68 | 36.43 |
| Os02t0288925-00 | Rice | cytosol | 18.44 | 35.61 |
| TraesCS3A01G461800.1 | Wheat | cytosol, peroxisome, plastid | 14.16 | 31.52 |
| TraesCS3A01G463100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 15.26 | 30.56 |
| TraesCS7A01G496900.1 | Wheat | cytosol | 10.26 | 28.87 |
| TraesCS3A01G461700.1 | Wheat | cytosol | 14.41 | 28.37 |
| TraesCS1A01G415600.1 | Wheat | cytosol | 13.19 | 27.62 |
| TraesCS3A01G462700.1 | Wheat | cytosol | 10.99 | 22.22 |
Protein Annotations
| Gene3D:1.20.1280.50 | Gene3D:2.130.10.10 | MapMan:35.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001680 | InterPro:IPR001810 | InterPro:IPR015943 | InterPro:IPR017986 |
| PFAM:PF00400 | PFAM:PF00646 | ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR44083 |
| PANTHER:PTHR44083:SF3 | SMART:SM00320 | SUPFAM:SSF50978 | SUPFAM:SSF81383 | InterPro:Topless_fam | EnsemblPlantsGene:TraesCS6A01G100500 |
| EnsemblPlants:TraesCS6A01G100500.1 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr6A:+:68126853..68132541
Molecular Weight (calculated)
92602.9 Da
IEP (calculated)
6.697
GRAVY (calculated)
-0.231
Length
819 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQLSPSGPV PQPSWSLDII PTKVACTLSQ GSNVTSMDFH PCHTLLLVGS ANGEFTIWEI GTRERLVSEP FQIWNMQACS AQFQRVVAKD PSMAVSQVTW
101: SPDGYMIGVA FTKHLIHLYV YEHRNKTREV VEIEAHSGEV NDIAFSQPNK QLCVVTCGDD KLIRVWDMHG QKIYSFEGHE APVYSICPHY IDDIQFIFSF
201: SLDGKMKAWF YDNVGSRVDF DVPEKWCTTM LYSADGTRLF SCGTSKQGDS HLVEWNQSEG SVKRSYSGFR KKTSGVVQGV VQFDIARNHI LAAGEDNQIK
301: FWDVDNTNML ACIEAGGALP SFPRLRFNKE GNLLAVTTVD SGFKIIANND GLKSLLSFGN LPSEVFRSPY EASTVKNGGD PASGSIDKKR RISEEKSDKG
401: KPWDLKEVLN PQKFRLDTML ETDQASKVSK VLDDDDLLRE IIIRVGFPTT LVRAALVCKR WYHHASEPAF LCRFCKRHPP CLLGFYVEDR EDHKMASIRF
501: FSLLNKPQEL AAVVRSLLGY SWDAYRGAPA NFLCSRNGRV FISLYDQVNR SKFTVGAHSP LCPERGLTVV PPFPHIEIQD GYSGTMNDLF SVEEVNDLSL
601: LHVSVVSNMQ RTKSTVHVHM WRHGDGVWRT YLTLDTDQLL DLRREPKAVL ANNKIYIASA QSDIVVFDLT ASSISMFQLP QGVEYGDRDT MLARAQDASG
701: VYLIHAKKLQ LHIWLHKGDN WLLVDTICLR EMVANMWIPG YRVEDESYAP LRIKHVGDYA EFMFLEMGRC ALQLDVKCMQ LRKVYIMAEE EVQLGDIHPL
801: KMIWPPMFPA LKDNPASSK
101: SPDGYMIGVA FTKHLIHLYV YEHRNKTREV VEIEAHSGEV NDIAFSQPNK QLCVVTCGDD KLIRVWDMHG QKIYSFEGHE APVYSICPHY IDDIQFIFSF
201: SLDGKMKAWF YDNVGSRVDF DVPEKWCTTM LYSADGTRLF SCGTSKQGDS HLVEWNQSEG SVKRSYSGFR KKTSGVVQGV VQFDIARNHI LAAGEDNQIK
301: FWDVDNTNML ACIEAGGALP SFPRLRFNKE GNLLAVTTVD SGFKIIANND GLKSLLSFGN LPSEVFRSPY EASTVKNGGD PASGSIDKKR RISEEKSDKG
401: KPWDLKEVLN PQKFRLDTML ETDQASKVSK VLDDDDLLRE IIIRVGFPTT LVRAALVCKR WYHHASEPAF LCRFCKRHPP CLLGFYVEDR EDHKMASIRF
501: FSLLNKPQEL AAVVRSLLGY SWDAYRGAPA NFLCSRNGRV FISLYDQVNR SKFTVGAHSP LCPERGLTVV PPFPHIEIQD GYSGTMNDLF SVEEVNDLSL
601: LHVSVVSNMQ RTKSTVHVHM WRHGDGVWRT YLTLDTDQLL DLRREPKAVL ANNKIYIASA QSDIVVFDLT ASSISMFQLP QGVEYGDRDT MLARAQDASG
701: VYLIHAKKLQ LHIWLHKGDN WLLVDTICLR EMVANMWIPG YRVEDESYAP LRIKHVGDYA EFMFLEMGRC ALQLDVKCMQ LRKVYIMAEE EVQLGDIHPL
801: KMIWPPMFPA LKDNPASSK
0001: MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEDEVHNGNW DEVEKYLSGF TKVDDNRYSM KIFFEIRKQK YLEALDRHDR PKAVDILVKD
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
0101: LKVFSTFNEE LFKEITQLLT LENFRENEQL SKYGDTKSAR AIMLVELKKL IEANPLFRDK LQFPTLRTSR LRTLINQSLN WQHQLCKNPR PNPDIKTLFV
0201: DHSCRLPNDA RAPSPVNNPL LGSLPKAEGF PPLGAHGPFQ PTPSPVPTPL AGWMSSPSSV PHPAVSGGPI ALGAPSIQAA LKHPRTPPSN SAVDYPSGDS
0301: DHVSKRTRPM GISDEVSLGV NMLPMTFPGQ AHGHNQTFKA PDDLPKTVAR TLSQGSSPMS MDFHPIKQTL LLVGTNVGDI GLWEVGSRER LVQKTFKVWD
0401: LSKCSMPLQA ALVKEPVVSV NRVIWSPDGS LFGVAYSRHI VQLYSYHGGE DMRQHLEIDA HVGGVNDIAF STPNKQLCVT TCGDDKTIKV WDAATGVKRY
0501: TFEGHEAPVY SICPHYKENI QFIFSTALDG KIKAWLYDNM GSRVDYEAPG RWCTTMAYSA DGTRLFSCGT SKDGESFIVE WNESEGAVKR TYQGFHKRSL
0601: GVVQFDTTKN RYLAAGDDFS IKFWDMDTIQ LLTAIDADGG LQASPRIRFN KEGSLLAVSA NDNMIKVMAN SDGLRLLHTV ENLSSESSKP AINSIPMVER
0701: PASVVSIPGM NGDSRNMVDV KPVITEESND KSKVWKLTEV GEPSQCRSLR LPENMRVTKI SRLIFTNSGN AILALASNAI HLLWKWQRND RNATGKATAS
0801: LPPQQWQPAS GILMTNDVAE TNPEEAVPCF ALSKNDSYVM SASGGKISLF NMMTFKTMAT FMPPPPAATF LAFHPQDNNI IAIGMDDSTI QIYNVRVDEV
0901: KSKLKGHSKR ITGLAFSNVL NVLVSSGADA QLCVWNTDGW EKQKSKVLQI PQGRSTSSLS DTRVQFHQDQ VHFLVVHETQ LAIYETTKLE CMKQWPVRES
1001: AAPITHATFS CDSQLIYTSF MDATICVFSS ANLRLRCRVN PSAYLPASLS NSNVHPLVIA AHPQESNMFA VGLSDGGVHI FEPLESEGKW GVAPPPENGS
1101: ASAVTATPSV GASASDQPQR
Arabidopsis Description
TPR1Topless-related protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WV90]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.