Factsheet for TraesCS6A01G047800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G055300.1	Wheat	cytosol	90.02	89.8
TraesCS3A01G428600.1	Wheat	cytosol	40.4	47.23
TraesCS3A01G456500.1	Wheat	cytosol	46.13	47.19
TraesCS1A01G393700.1	Wheat	cytosol	49.63	47.04
TraesCS3A01G456400.1	Wheat	cytosol	27.18	46.38
TraesCS6A01G023900.1	Wheat	cytosol	44.64	45.43
TraesCS6A01G023800.1	Wheat	cytosol	43.64	44.64
TraesCS3A01G109100.1	Wheat	cytosol	46.63	44.31
TraesCS6A01G010800.1	Wheat	cytosol	47.88	44.14
TraesCS6A01G100400.1	Wheat	cytosol	47.13	43.45
TraesCS2A01G058400.1	Wheat	cytosol	38.4	40.96
TraesCS2A01G066000.1	Wheat	cytosol	42.89	39.36
EES04945	Sorghum	cytosol	41.15	39.29
Os02t0288925-00	Rice	cytosol	39.65	37.5
TraesCS3A01G461800.1	Wheat	cytosol, peroxisome, plastid	32.17	35.05
TraesCS3A01G463100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	34.41	33.74
TraesCS3A01G461700.1	Wheat	cytosol	33.42	32.21
TraesCS7A01G496900.1	Wheat	cytosol	21.95	30.24
TraesCS1A01G415600.1	Wheat	cytosol	27.68	28.39
TraesCS3A01G462700.1	Wheat	cytosol	25.44	25.19
TraesCS6A01G100500.1	Wheat	cytosol	46.38	22.71

Protein Annotations

EnsemblPlants:TraesCS6A01G047800.1	EnsemblPlantsGene:TraesCS6A01G047800	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	PANTHER:PTHR33207	PANTHER:PTHR33207:SF22	SEG:seg	SUPFAM:SSF81383	MapMan:35.2

Description

No Description!

Coordinates

chr6A:+:24068505..24071017

Molecular Weight (calculated)

44873.7 Da

IEP (calculated)

7.554

GRAVY (calculated)

-0.062

Length

401 amino acids

Sequence
(BLAST)

001: MEGERQQPPA AAAAASKVLD DDDLLAEILL RVALPTTLLR AALVCKRWLG HASGRAFLRR SRKLHPPRLL GFYVEGDRDV PADPPAFVPV LPQPAELAAV
101: LRRASFSFDI YNGQLVQIHD CRNGSVFVQV GSEGRAVMRV HTPLCPRRPV AFIPPLPRPA LRPRGLCSFT QILSTEERGG LSYHYLYVES TVDEPETRLH
201: VYVLQDGLWL PRPPLDMHQL PRPLLQPRPV LVDGRIYMPA GVSDIVVLDL TASSFSTIQL PRGAKHDGCG ATMLARAHDA SGVYFILVEE FRLLIWLHKG
301: GNWSLVDTIC LREMCPGLRV LGCTAEDEES GLVIRRVGND AEFVLLQMGR CALHLDTRCR TLRKVYEQTE EHQCFGDIHP FMMIWHPTFP ALRGDHARDA
401: M

Best Arabidopsis Sequence Match ( AT2G02030.1 )
(BLAST)

001: MSGKTSSRGQ QDEISGEKHE PTPTKEIKRR RKEFEKIHIP NEIVEEILVR LPVKSLTRFQ TVSKHWRTLI TSKYFGKRHM ALEKSKGCKL LFVCDDFVDR
101: AEDTLFLKTV ALEKTSVSEG DEQAFEFEGY KGFLDISESC DGLVCFYDTT RAVEVMNPAT TMFIELPLSR IQQLCIYKPN PEVELEPVQD PNPVLDPVMT
201: CSQIGVGKDS VSGSYKLVWM YNTSPATPPT CEVLDLDGKK WRFVNTTSLD HHQILCDQRP VFANGSLYWL TGDEEGYATT QTKLIVLDLH TEMFQVIQTP
301: PFITRDASGD KIGLCNLDGR LCISELKKDC KQEF

Arabidopsis Description

Putative F-box protein At2g02030 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZPS1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.