Factsheet for TraesCS1A01G415600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G461800.1	Wheat	cytosol, peroxisome, plastid	33.5	35.6
TraesCS3A01G461700.1	Wheat	cytosol	34.78	32.69
TraesCS3A01G463100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	33.76	32.27
TraesCS3A01G456500.1	Wheat	cytosol	29.41	29.34
TraesCS6A01G047800.1	Wheat	cytosol	28.39	27.68
TraesCS6A01G023800.1	Wheat	cytosol	27.37	27.3
TraesCS1A01G393700.1	Wheat	cytosol	28.9	26.71
TraesCS6A01G100400.1	Wheat	cytosol	29.67	26.67
TraesCS6A01G023900.1	Wheat	cytosol	26.85	26.65
TraesCS3A01G428600.1	Wheat	cytosol	22.76	25.95
TraesCS3A01G456400.1	Wheat	cytosol	15.35	25.53
TraesCS6A01G010800.1	Wheat	cytosol	28.39	25.52
TraesCS3A01G462700.1	Wheat	cytosol	25.83	24.94
TraesCS3A01G109100.1	Wheat	cytosol	26.85	24.88
Os04t0313500-00	Rice	cytosol	34.02	24.72
TraesCS2A01G066000.1	Wheat	cytosol	26.34	23.57
TraesCS7A01G496900.1	Wheat	cytosol	16.37	21.99
TraesCS2A01G058400.1	Wheat	cytosol	20.72	21.54
TraesCS6A01G100500.1	Wheat	cytosol	27.62	13.19

Protein Annotations

EnsemblPlants:TraesCS1A01G415600.1	EnsemblPlantsGene:TraesCS1A01G415600	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR33207	PANTHER:PTHR33207:SF22	PFAM:PF00646
SEG:seg	SUPFAM:SSF81383	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1A:+:574395922..574398193

Molecular Weight (calculated)

44712.2 Da

IEP (calculated)

7.995

GRAVY (calculated)

-0.053

Length

391 amino acids

Sequence
(BLAST)

001: MDLPDELLHL RGRRGGEAAM AAVIGDDDLL REILLRLGFP AFLVHAALVS KRWLRVATDT VFLRRFRDRH PPRILGFYVN HCSTLRTVFV SVSEARELRY
101: AVNRAGFHHC NQSVRIADSR NGRLLLKSRP FGCGGYTMFS PLCPARGVLP IRLPPELLHI GRLSPLDYSS QCLYLLFRDN NDGIVLVSVR LSGRKLSARV
201: YVGQSDAWGE AILAEGELPV PLKFVRSMMI VNDKLYIVLD NCYICGLDFV APRLRLFVVK VPDKVGADFK LSHGDDSGLF LIHRDRFHLS VWNHQMDDNG
301: EDRWELVDRF VVHAAQDRHE RFRVCAVSED GGFVFLCLWT SRTIISVDLR SRKETTYEIK VQGIYFTTIF PLMTIWPPTF PTLNDEDDHD E

Best Arabidopsis Sequence Match ( AT5G07610.1 )
(BLAST)

001: MSSCSRTRTK APRSARSRRN GGFSSSSATI VADIDDVLIQ ILSFLPIKTL LRFKRVSKRW LSLITNPVFS NRVIKSNHPL PISGFFLHSP REIKYSFVSL
101: DDDATNQRIS SSLPLWFTDH QTDMIIMQST NGLLLCKCSC ASSNHFNTNY YVYNPTTKQY TLLHQIAGHI ALSLAFDPSR SPHYKVFCLR GRSNNSFSSA
201: SDSELYHIEV YSSNEGLWRR VVPVPTSPST FIEFSYSVFW NGAVNWYGFS SRDCLSFDIN TQEIKILPLP DHEHEDEPLP DPRILMFLDE SQGNLYYIEV
301: NNQSSSNLRV YEMESNSSSW SVKYNVDLEP LAAAFPEMIR TEYYTDRRIY AFSVIGFVKE ETDAASYILL HIPNQAVKYN FIDKTFKKLC DFKSLVNDAP
401: EDHFYRFQRT FQFIKSLANV

Arabidopsis Description

F-box protein At5g07610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLS0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.