Factsheet for TraesCS2A01G066000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G064400.1	Wheat	cytosol	83.52	81.84
TraesCS6A01G047800.1	Wheat	cytosol	39.36	42.89
TraesCS3A01G456500.1	Wheat	cytosol	37.99	42.35
TraesCS3A01G428600.1	Wheat	cytosol	32.04	40.82
TraesCS6A01G023800.1	Wheat	cytosol	36.61	40.82
TraesCS6A01G010800.1	Wheat	cytosol	40.5	40.69
TraesCS1A01G393700.1	Wheat	cytosol	39.36	40.66
TraesCS3A01G456400.1	Wheat	cytosol	21.74	40.43
TraesCS6A01G023900.1	Wheat	cytosol	35.7	39.59
TraesCS6A01G100400.1	Wheat	cytosol	39.36	39.54
TraesCS2A01G058400.1	Wheat	cytosol	33.41	38.83
TraesCS3A01G109100.1	Wheat	cytosol	37.3	38.63
EES04945	Sorghum	cytosol	35.24	36.67
Os02t0288925-00	Rice	cytosol	35.24	36.32
TraesCS3A01G461800.1	Wheat	cytosol, peroxisome, plastid	26.54	31.52
TraesCS7A01G496900.1	Wheat	cytosol	19.91	29.9
TraesCS3A01G463100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	27.69	29.58
TraesCS3A01G461700.1	Wheat	cytosol	27.0	28.37
TraesCS1A01G415600.1	Wheat	cytosol	23.57	26.34
TraesCS3A01G462700.1	Wheat	cytosol	22.2	23.95
TraesCS6A01G100500.1	Wheat	cytosol	38.9	20.76

Protein Annotations

EnsemblPlants:TraesCS2A01G066000.1	EnsemblPlantsGene:TraesCS2A01G066000	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
PANTHER:PTHR33207	PANTHER:PTHR33207:SF22	SEG:seg	SUPFAM:SSF81383	MapMan:35.2	:

Description

No Description!

Coordinates

chr2A:-:29814924..29816944

Molecular Weight (calculated)

49683.1 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.097

Length

437 amino acids

Sequence
(BLAST)

001: MDPVEIPGGV DPNPNTPCVY GKMQTHSQSP PLQAADSVSR VLDDDDLLIE IIVRLGLPTT LIRAILVCKR WFFIVSDKAF LRRFRSLHPP RLLGFYVSTR
101: STDELSLVLL RPRFVPMLPQ PLELATAVRL AENYSLETYD EELACVCECQ NDTILLHGFQ DKSILFGVHW PLCPERGVVA PPITPYEEFD GTAATCAHFL
201: LKEEGDGKNL TFIWFSIGYL IEGKDYSIKY KAHIYMLQDG LWYWRSSAAA VLPSPWPDPH PLLSGNKIYM EHSTSIAALN LTTSNFSTIP LPEGMERYVC
301: EDMMLSRAND SGVYLVHLEK LQLRIWLHTG GNSGGMRNWL LLDTICLREM LDALGMADNE QPTLLDTFQT GDNLQFVFFK IGQSALHLDI KRRELRKVYE
401: VTEDERTLER IYPFMMTWPP TFPVLKNDPA SPNRAVL

Best Arabidopsis Sequence Match ( AT5G03970.1 )
(BLAST)

001: MSCSARLKTN LGMTSALSTH EVLNSNDTMC EILILLPPET IYKLILVSKR WLEIIASPCF RHTYLAKWKP NFELIGFFVC SSMYLGRRID GTRRPRAEPS
101: LPLLSTSSIG DEIESSGILK KLGYYIDSAD GLLLCGRHPK AYYLWDPSTQ KQQQLPRPRV HFEELCMSLI SEDSPDQGFS YKVVRAECVA FPVNSTKVKV
201: ETFSSKTSTW SYSELICLEP LSLSPWTPGR VIKGVVYWHA RGGKIAIYDS NSEEKRIDVI KLPKTYDYDE QVLGETDDGS LQYGWSNKSV MEVWKLEKVG
301: NVLEWNLLFK VNFKAMWKMN QAVATRFSTW TKETQLLALF NQKSDLVYIR CDTQIFIYHT ETKRVEVVQY QGRKSTLVWD FNKVVPYFRR TWPCSPLFEN
401: NAMMIDTPQC NASSAGSN

Arabidopsis Description

F-box protein At5g03970 [Source:UniProtKB/Swiss-Prot;Acc:Q94A64]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.