Factsheet for TraesCS6A01G100400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G018030.1	Barley	cytosol	89.2	88.99
TraesCS6B01G128400.1	Wheat	cytosol	94.25	88.74
TraesCS1A01G393700.1	Wheat	cytosol	64.6	66.43
TraesCS6A01G010800.1	Wheat	cytosol	51.72	51.72
TraesCS6A01G047800.1	Wheat	cytosol	43.45	47.13
TraesCS6A01G023800.1	Wheat	cytosol	42.07	46.68
TraesCS3A01G109100.1	Wheat	cytosol	44.6	45.97
TraesCS3A01G456400.1	Wheat	cytosol	24.83	45.96
TraesCS6A01G023900.1	Wheat	cytosol	40.92	45.18
TraesCS3A01G456500.1	Wheat	cytosol	40.46	44.9
TraesCS3A01G428600.1	Wheat	cytosol	34.71	44.02
TraesCS2A01G058400.1	Wheat	cytosol	37.93	43.88
EES04945	Sorghum	cytosol	41.38	42.86
TraesCS2A01G066000.1	Wheat	cytosol	39.54	39.36
Os02t0288925-00	Rice	cytosol	37.24	38.21
TraesCS3A01G461800.1	Wheat	cytosol, peroxisome, plastid	30.11	35.6
TraesCS3A01G461700.1	Wheat	cytosol	31.95	33.41
TraesCS3A01G463100.1	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	30.34	32.27
TraesCS7A01G496900.1	Wheat	cytosol	20.46	30.58
TraesCS1A01G415600.1	Wheat	cytosol	26.67	29.67
TraesCS3A01G462700.1	Wheat	cytosol	23.22	24.94
TraesCS6A01G100500.1	Wheat	cytosol	42.07	22.34

Protein Annotations

EnsemblPlants:TraesCS6A01G100400.1	EnsemblPlantsGene:TraesCS6A01G100400	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR33207	PANTHER:PTHR33207:SF22	PFAM:PF12937
SEG:seg	SUPFAM:SSF81383	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6A:+:67641406..67644907

Molecular Weight (calculated)

49743.6 Da

IEP (calculated)

8.273

GRAVY (calculated)

-0.132

Length

435 amino acids

Sequence
(BLAST)

001: MDAPEVISQR VHPKKKPCVD GNQQQHSQTS MGRAISEVLN DDNILIEILI RVGFPTTLVR AALVCKRWYH LASDRGFLCR FRKRNPPRLL GLYIDVRWTG
101: LGLYATPRFV PLQPQAPELD TVVRRVASHS FDAYGDGIWI MHCQNGSIFT RYRKGTEVTH GVYRPLCPER DMDFIPPLPT AQNRMQKLLG AILSKEGDGL
201: SYLYVLAECT AQTKTFKVRV YMLQGGVWCM HTSATTQLPH MLPALKPVLV DDKIYMADVF SNDIIVLDLA TSSFSRILLP QGVKYHTLHT ILSRADDASG
301: LYLIHVHVKE HQLCIWLHKG DNWLLVDTLC LHQMWANLRM RDHTLEDEDI SYAYISQVGD NVQFVFLKTM CGRILYLDVT SRTLHKVHGM AEKDRHFSAI
401: YPFMMIWPPI FPALKDDHAR QGSWVEMGQP ETVST

Best Arabidopsis Sequence Match ( AT3G16210.1 )
(BLAST)

001: MSKFLPEELA IEILVRLSMK DLARFRCVCK TWRDLINDPG FTETYRDMSP AKFVSFYDKN FYMLDVEGKH PVITNKLDFP LDQSMIDEST CVLHCDGTLC
101: VTLKNHTLMV WNPFSKQFKI VPNPGIYQDS NILGFGYDPV HDDYKVVTFI DRLDVSTAHV FEFRTGSWGE SLRISYPDWH YRDRRGTFLD QYLYWIAYRS
201: SADRFILCFN LSTHEYRKLP LPVYNQGVTS SWLGVTSQKL CITEYEMCKK EIRISVMEKT GSWSKIISLS MSSFISVQDR IYDYQVEFVS FTRKNDLVVT
301: FTGYNDHFEM EPEERTKKKM FLYKTGNERS EEVRFCNPLA GLRFLCECVE TLKIVNRIFI

Arabidopsis Description

Putative F-box protein At3g16210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.