Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G100400.1 | Wheat | cytosol | 88.99 | 89.2 |
| TraesCS6B01G128400.1 | Wheat | cytosol | 87.39 | 82.47 |
| HORVU6Hr1G016700.2 | Barley | cytosol, peroxisome, plastid | 44.95 | 48.16 |
| HORVU7Hr1G095850.1 | Barley | cytosol | 41.28 | 47.12 |
| HORVU6Hr1G004080.1 | Barley | cytosol | 26.15 | 43.51 |
| EES04945 | Sorghum | cytosol | 40.6 | 42.14 |
| HORVU6Hr1G004190.1 | Barley | extracellular | 13.3 | 39.46 |
| Os02t0288925-00 | Rice | cytosol | 37.16 | 38.21 |
| HORVU3Hr1G099010.2 | Barley | cytosol | 32.8 | 34.29 |
| HORVU0Hr1G014790.1 | Barley | endoplasmic reticulum, plasma membrane | 41.97 | 28.46 |
| HORVU6Hr1G002130.4 | Barley | plastid | 42.89 | 21.9 |
| HORVU5Hr1G114130.1 | Barley | cytosol, nucleus, plastid | 41.28 | 19.96 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G018030.1 | EnsemblPlantsGene:HORVU6Hr1G018030 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR33207 | PANTHER:PTHR33207:SF22 | PFAM:PF12937 |
| SEG:seg | SUPFAM:SSF81383 | UniParc:UPI0002969274 | UniProt:M0Z1Z0 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr6H:-:44178474..44182431
Molecular Weight (calculated)
49792.7 Da
IEP (calculated)
8.228
GRAVY (calculated)
-0.115
Length
436 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAPEVIPQR VDPKKKPCVD GEQQQHSHTS MDGTMSEVLN DDNLLIEILI RVGFPTTLVR AALVCKRWYR HASDRRFLGR FRKRNPPRLL GLYIDVRWTG
101: LGLYATPHFV PMQPQAPELD TVIRRVMSNS FDAYDGGIWI LHCQNGSIFT RCRKGTVVTH GVCRPLCPER SMDFIPPLPR VQNGIQKLLG AILSKEEGDG
201: LSYLYVLAEC TGQTKTFKVR VYMLHGGVWC MHTSATTQLP HMLPALKAVL VDDKIYMADV FSNDIIVLDL ATSSFSRILL PQGVKYHTLH TILARADDAS
301: ALYLIHVHVM ERQLCIWLHK GDNWLLVDTF CLHQMWANLR MRDHTLNDED IGYAYISQVG DNVQFVFLKT MGGCILYLDV TRRTLHKVHG ITEKDRHFSV
401: IYPFMMIWPP IFPALKDDHA RQGSWVEKGQ PETVST
101: LGLYATPHFV PMQPQAPELD TVIRRVMSNS FDAYDGGIWI LHCQNGSIFT RCRKGTVVTH GVCRPLCPER SMDFIPPLPR VQNGIQKLLG AILSKEEGDG
201: LSYLYVLAEC TGQTKTFKVR VYMLHGGVWC MHTSATTQLP HMLPALKAVL VDDKIYMADV FSNDIIVLDL ATSSFSRILL PQGVKYHTLH TILARADDAS
301: ALYLIHVHVM ERQLCIWLHK GDNWLLVDTF CLHQMWANLR MRDHTLNDED IGYAYISQVG DNVQFVFLKT MGGCILYLDV TRRTLHKVHG ITEKDRHFSV
401: IYPFMMIWPP IFPALKDDHA RQGSWVEKGQ PETVST
001: MLDKVLILSL FFVFCIFDLP LCMYAKANLI DKRLLRMEAE TSWTNYPYSY ITYVPEAESY REQSDDEAKV ETFSMDSLLP DDLLERILSF LPIASIFRAG
101: TVCKRWNEIV SSRRFLCNFS NNSVSQRPWY FMFTTTDDPS GYAYDPIIRK WYSFDLPCIE TSNWFVASSC GLVCFMDNDC RNKIYVSNPI TKQWRTLIEP
201: PGHKSTDYTA MSTSVNRANQ AVNRANRSYS VSIVKSKQVP GNFFQWDLSI HLYSSETMTW TTLVNDVLSG WRGGNESVIC NNVLYFMIYS TGGSDHRHGL
301: IASNLSSIGS PSSGILMRSF IPMPCSLTCG RLMNLRERLV IVGGIGKHDR PEVIKGIGIW VLKGKEWVEM AKMPQRFFQG FGEFDEVFAS SGTDDLVYIQ
401: SYGSPALLTF DMNLKYWRWS QKCPVTKKFP LQLFTGFCFE PRLEIAP
101: TVCKRWNEIV SSRRFLCNFS NNSVSQRPWY FMFTTTDDPS GYAYDPIIRK WYSFDLPCIE TSNWFVASSC GLVCFMDNDC RNKIYVSNPI TKQWRTLIEP
201: PGHKSTDYTA MSTSVNRANQ AVNRANRSYS VSIVKSKQVP GNFFQWDLSI HLYSSETMTW TTLVNDVLSG WRGGNESVIC NNVLYFMIYS TGGSDHRHGL
301: IASNLSSIGS PSSGILMRSF IPMPCSLTCG RLMNLRERLV IVGGIGKHDR PEVIKGIGIW VLKGKEWVEM AKMPQRFFQG FGEFDEVFAS SGTDDLVYIQ
401: SYGSPALLTF DMNLKYWRWS QKCPVTKKFP LQLFTGFCFE PRLEIAP
Arabidopsis Description
HWSGalactose oxidase/kelch repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRL4]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.