Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- golgi 1
- plastid 2
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G080900.1 | Wheat | cytosol | 48.89 | 72.1 |
| HORVU7Hr1G095850.1 | Barley | cytosol | 43.0 | 45.81 |
| HORVU6Hr1G018030.1 | Barley | cytosol | 48.16 | 44.95 |
| HORVU6Hr1G004190.1 | Barley | extracellular | 14.99 | 41.5 |
| HORVU6Hr1G004080.1 | Barley | cytosol | 25.8 | 40.08 |
| EES04945 | Sorghum | cytosol | 40.54 | 39.29 |
| Os02t0288925-00 | Rice | cytosol | 38.33 | 36.79 |
| HORVU3Hr1G099010.2 | Barley | cytosol | 34.15 | 33.33 |
| HORVU0Hr1G014790.1 | Barley | endoplasmic reticulum, plasma membrane | 44.96 | 28.46 |
| HORVU6Hr1G002130.4 | Barley | plastid | 46.19 | 22.01 |
| HORVU5Hr1G114130.1 | Barley | cytosol, nucleus, plastid | 46.44 | 20.95 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G016700.2 | EnsemblPlantsGene:HORVU6Hr1G016700 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:F-box-like_dom_sf |
| PANTHER:PTHR33207 | PANTHER:PTHR33207:SF22 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI000295FEB0 | UniProt:M0UFH2 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:37776360..37780060
Molecular Weight (calculated)
46114.9 Da
IEP (calculated)
4.773
GRAVY (calculated)
0.059
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPSEIPHRV NLFPNSPCVD EETLQQSARP FDPVSKVLGD DDLLMEILLL IGCPTTLVCA ALVCKQWFCH ASDPAFLCRF SKLHPPCLLG FYVNTRIDLS
101: RFVPMLPQPA EFDAVIRRAS SSLDKYKLIL DDWNDIVFTN KFKNHEEEPE SIHIVLNLLC PERGMVSVPP FPIHECQDGY FHTFSRLLFK EEGDGFSYVY
201: LDMESDGTKS TMHVYMLQDG VWCVHASATT QLPCLPLKLN PLIVDNKIYM AATLSEILVL DFTALSFSTF QLPQGLVIGD HGTMLSRADD DSGVYLIHLK
301: EPQLCIWLRT RDNWLLVDTI CLHEMYAKLG MSDVRGCVWI NQVGGNAEFV FLQMGRCLVY VGIKCRKLCK VYELTSEDQW FGPIQPCMTI WPPTFPALKD
401: DPASDAT
101: RFVPMLPQPA EFDAVIRRAS SSLDKYKLIL DDWNDIVFTN KFKNHEEEPE SIHIVLNLLC PERGMVSVPP FPIHECQDGY FHTFSRLLFK EEGDGFSYVY
201: LDMESDGTKS TMHVYMLQDG VWCVHASATT QLPCLPLKLN PLIVDNKIYM AATLSEILVL DFTALSFSTF QLPQGLVIGD HGTMLSRADD DSGVYLIHLK
301: EPQLCIWLRT RDNWLLVDTI CLHEMYAKLG MSDVRGCVWI NQVGGNAEFV FLQMGRCLVY VGIKCRKLCK VYELTSEDQW FGPIQPCMTI WPPTFPALKD
401: DPASDAT
001: MERLGFWGLL MGSVEKSLDS GNSLACSASA KNGDEESSTS SKQVSPLKGS GSRNTSPLGR VGSRNTSPSR QKVVKTKPRG LEEETVASFG KQVVADVQME
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL
Arabidopsis Description
F-box/kelch-repeat protein At5g15710 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFV5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.