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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • plastid 1
  • mitochondrion 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, peroxisome, plastid
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:plastid
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G027100.1 Wheat cytosol 89.27 86.55
TraesCS6D01G027200.1 Wheat cytosol 87.43 84.77
TraesCS6B01G032600.1 Wheat cytosol 87.43 84.77
TraesCS6A01G023900.1 Wheat cytosol 86.65 84.01
TraesCS6D01G027300.1 Wheat cytosol 80.1 83.84
TraesCS6B01G032500.1 Wheat cytosol 86.13 83.5
TraesCS6A01G023800.1 Wheat cytosol 84.56 82.4
HORVU6Hr1G004080.1 Barley cytosol 55.24 80.53
HORVU6Hr1G004190.1 Barley extracellular 27.23 70.75
HORVU6Hr1G016700.2 Barley cytosol, peroxisome, plastid 45.81 43.0
HORVU6Hr1G018030.1 Barley cytosol 47.12 41.28
EES04945 Sorghum cytosol 41.88 38.1
Os02t0288925-00 Rice cytosol 37.7 33.96
HORVU3Hr1G099010.2 Barley cytosol 31.41 28.78
HORVU0Hr1G014790.1 Barley endoplasmic reticulum, plasma membrane 47.64 28.3
HORVU6Hr1G002130.4 Barley plastid 47.64 21.31
HORVU5Hr1G114130.1 Barley cytosol, nucleus, plastid 45.29 19.18
Protein Annotations
EnsemblPlants:HORVU7Hr1G095850.1EnsemblPlantsGene:HORVU7Hr1G095850GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:F-box-like_dom_sf
PANTHER:PTHR33207PANTHER:PTHR33207:SF22SEG:segSUPFAM:SSF81383UniParc:UPI0002966595UniProt:M0UTD3
MapMan:35.2:::::
Description
No Description!
Coordinates
chrchr7H:+:584517531..584519943
Molecular Weight (calculated)
43906.7 Da
IEP (calculated)
8.457
GRAVY (calculated)
-0.059
Length
382 amino acids
Sequence
(BLAST)
001: MAAVSKVLED EDLLTEILLR TVFPTTLLKT ALVCTRWLTH ASDRAFLRRF REIHPPRLLG FYINKGQNTP HFIPILPQPL ELAGVIRRTT SSLGTYQRVP
101: SVPTYILGCR NGNVLIRQHD RVGITFAAHN VVFPERGMDI LPQFPRPQSQ YLLDTTYSRI LSKEEGDGLS YLYVLMHQTR DGKHRVYIYI LRHGIWCMNH
201: ILTIQQPPRP WSVLKSVLSN NKIYVPAGWR NIIVLNLSAS SFSIIELPEG MEYGERNTIL SQADDVAGVY LIHVKKFQLR IWLHNGYTWL LMDTIYLRGI
301: CADLSMADGN TSLLINQAGD NAEFVFLDMG RCTFLLDIKC KTMHKVYEKE DGDNFFCEIH PLMMIWPPVF PTLKDDPTRN AM
Best Arabidopsis Sequence Match ( AT5G03970.2 )
(BLAST)
001: MTSALSTHEV LNSNDTMCEI LILLPPETIY KLILVSKRWL EIIASPCFRH TYLAKWKPNF ELIGFFVCSS MYLGRRIDGT RRPRAEPSLP LLSTSSIGDE
101: IESSGILKKL GYYIDSADGL LLCGRHPKAY YLWDPSTQKQ QQLPRPRVHF EELCMSLISE DSPDQGFSYK VVRAECVAFP VNSTKVKVET FSSKTSTWSY
201: SELICLEPLS LSPWTPGRVI KGVVYWHARG GKIAIYDSNS EEKRIDVIKL PKTYDYDEQV LGETDDGSLQ YGWSNKSVME VWKLEKVGNV LEWNLLFKVN
301: FKAMWKMNQA VATRFSTWTK ETQLLALFNQ KSDLVYIRCD TQIFIYHTET KRVEVVQYQG RKSTLVWDFN KVVPYFRRTW PCSPLFENNA MMIDTPQCNA
401: SSAGSN
Arabidopsis Description
F-box protein At5g03970 [Source:UniProtKB/Swiss-Prot;Acc:Q94A64]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.