Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G363100.1 | Wheat | cytosol | 79.03 | 67.91 |
| TraesCS6D01G055300.1 | Wheat | cytosol | 57.8 | 56.22 |
| TraesCS6D01G023200.1 | Wheat | cytosol | 50.13 | 49.0 |
| TraesCS5D01G497500.1 | Wheat | cytosol | 29.41 | 48.94 |
| TraesCS3D01G449600.1 | Wheat | cytosol | 49.62 | 48.38 |
| TraesCS3D01G110900.2 | Wheat | cytosol | 52.17 | 47.55 |
| TraesCS3D01G449700.1 | Wheat | cytosol | 49.1 | 47.17 |
| TraesCS6D01G027300.1 | Wheat | cytosol | 43.99 | 47.12 |
| TraesCS6D01G069200.1 | Wheat | cytosol | 37.34 | 46.79 |
| TraesCS6D01G027100.1 | Wheat | cytosol | 46.8 | 46.45 |
| TraesCS1D01G402800.1 | Wheat | cytosol, nucleus, peroxisome | 41.18 | 46.4 |
| TraesCS3D01G449800.1 | Wheat | cytosol, mitochondrion, plasma membrane | 33.25 | 46.1 |
| TraesCS3D01G449500.1 | Wheat | cytosol | 50.13 | 46.01 |
| TraesCS6D01G027200.1 | Wheat | cytosol | 45.78 | 45.43 |
| TraesCS6D01G027500.1 | Wheat | cytosol | 49.36 | 43.96 |
| TraesCS6D01G044000.1 | Wheat | cytosol | 35.81 | 43.08 |
| TraesCS2D01G057400.2 | Wheat | cytosol | 46.55 | 42.62 |
| TraesCS1D01G065900.1 | Wheat | cytosol | 49.36 | 42.05 |
| TraesCS6D01G080900.1 | Wheat | cytosol | 28.9 | 40.94 |
| EES04945 | Sorghum | cytosol | 43.48 | 40.48 |
| TraesCS6D01G080600.1 | Wheat | cytosol | 24.3 | 39.92 |
| TraesCS3D01G456400.1 | Wheat | cytosol, plastid | 15.35 | 39.22 |
| Os02t0288925-00 | Rice | cytosol | 42.46 | 39.15 |
| TraesCS2D01G064400.1 | Wheat | cytosol | 43.48 | 38.12 |
| TraesCS7D01G484000.1 | Wheat | cytosol, peroxisome, plastid | 37.6 | 36.12 |
| TraesCS3D01G455200.1 | Wheat | cytosol | 36.32 | 34.72 |
| TraesCS3D01G457000.1 | Wheat | plasma membrane | 35.81 | 34.23 |
| TraesCS7D01G483700.1 | Wheat | cytosol, mitochondrion | 38.62 | 33.78 |
| TraesCS3D01G455400.1 | Wheat | cytosol, peroxisome, plastid | 35.81 | 33.65 |
| TraesCS3D01G456200.1 | Wheat | cytosol | 34.27 | 33.0 |
| TraesCS3D01G457100.1 | Wheat | cytosol | 35.29 | 32.86 |
| TraesCS3D01G456800.1 | Wheat | cytosol | 36.32 | 31.42 |
| TraesCS3D01G456600.1 | Wheat | cytosol | 31.2 | 30.81 |
| TraesCS3D01G455100.1 | Wheat | cytosol | 34.53 | 30.47 |
| TraesCS7D01G484100.1 | Wheat | cytosol | 20.2 | 29.04 |
| TraesCS6D01G082100.7 | Wheat | cytosol | 52.17 | 23.97 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G363300.1 | EnsemblPlantsGene:TraesCS5D01G363300 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | InterPro:IPR015915 | InterPro:Kelch-typ_b-propeller | PANTHER:PTHR33207 |
| PANTHER:PTHR33207:SF22 | PFAM:PF00646 | SEG:seg | SUPFAM:SSF117281 | SUPFAM:SSF81383 | MapMan:35.2 |
Description
No Description!
Coordinates
chr5D:-:441237445..441239191
Molecular Weight (calculated)
44404.0 Da
IEP (calculated)
8.877
GRAVY (calculated)
-0.153
Length
391 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGDSQTSPA AAAVSKVLED DDLLVEILLH VGFPTTLVRA ALVCKRWLGH ASEPAFLRRF RKLHPPRLLG FYIDDRYCDS APPTFVRMLP QPAELSAIVR
101: RTNFSAYRRL SPGMLDCRNG SVFTTLYTDK SALGVHRPLC HGGGLTIVPS LPRPLLPLGS SCTFRQVLSK QGDGLSYYYL YVESSNQESR MHVYMMQDGS
201: WRRHHLLDID QLRRPRSMPK AVLVGNKIYM AAGPSDILVF DLTTSSFSMV RLPQGVEHGN GATTMLSRAG DASGVYLIQL KEFQLRIWLR KGDNWLLVDT
301: ICLHEMCDNL RKSDSTIKDE HSVLLMDQVV DYGDFVFLQM GGCVLHLDVR CRTLRKVYEY RSTRYRDIHP FMMIWPPIFP AVKYDPPRTA T
101: RTNFSAYRRL SPGMLDCRNG SVFTTLYTDK SALGVHRPLC HGGGLTIVPS LPRPLLPLGS SCTFRQVLSK QGDGLSYYYL YVESSNQESR MHVYMMQDGS
201: WRRHHLLDID QLRRPRSMPK AVLVGNKIYM AAGPSDILVF DLTTSSFSMV RLPQGVEHGN GATTMLSRAG DASGVYLIQL KEFQLRIWLR KGDNWLLVDT
301: ICLHEMCDNL RKSDSTIKDE HSVLLMDQVV DYGDFVFLQM GGCVLHLDVR CRTLRKVYEY RSTRYRDIHP FMMIWPPIFP AVKYDPPRTA T
001: MSKFLPEELA IEILVRLSMK DLARFRCVCK TWRDLINDPG FTETYRDMSP AKFVSFYDKN FYMLDVEGKH PVITNKLDFP LDQSMIDEST CVLHCDGTLC
101: VTLKNHTLMV WNPFSKQFKI VPNPGIYQDS NILGFGYDPV HDDYKVVTFI DRLDVSTAHV FEFRTGSWGE SLRISYPDWH YRDRRGTFLD QYLYWIAYRS
201: SADRFILCFN LSTHEYRKLP LPVYNQGVTS SWLGVTSQKL CITEYEMCKK EIRISVMEKT GSWSKIISLS MSSFISVQDR IYDYQVEFVS FTRKNDLVVT
301: FTGYNDHFEM EPEERTKKKM FLYKTGNERS EEVRFCNPLA GLRFLCECVE TLKIVNRIFI
101: VTLKNHTLMV WNPFSKQFKI VPNPGIYQDS NILGFGYDPV HDDYKVVTFI DRLDVSTAHV FEFRTGSWGE SLRISYPDWH YRDRRGTFLD QYLYWIAYRS
201: SADRFILCFN LSTHEYRKLP LPVYNQGVTS SWLGVTSQKL CITEYEMCKK EIRISVMEKT GSWSKIISLS MSSFISVQDR IYDYQVEFVS FTRKNDLVVT
301: FTGYNDHFEM EPEERTKKKM FLYKTGNERS EEVRFCNPLA GLRFLCECVE TLKIVNRIFI
Arabidopsis Description
Putative F-box protein At3g16210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.