Factsheet for TraesCS1D01G065900.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G083300.1	Wheat	cytosol	50.33	91.3
TraesCS1D01G402800.1	Wheat	cytosol, nucleus, peroxisome	46.19	61.1
TraesCS6D01G069200.1	Wheat	cytosol	35.08	51.6
TraesCS6D01G055300.1	Wheat	cytosol	44.44	50.75
TraesCS5D01G363300.1	Wheat	cytosol, nucleus, peroxisome	42.05	49.36
TraesCS6D01G023200.1	Wheat	cytosol	42.92	49.25
TraesCS6D01G044000.1	Wheat	cytosol	34.42	48.62
TraesCS3D01G449600.1	Wheat	cytosol	40.96	46.88
TraesCS6D01G027300.1	Wheat	cytosol	37.25	46.85
TraesCS3D01G449700.1	Wheat	cytosol	41.39	46.68
TraesCS6D01G027100.1	Wheat	cytosol	39.65	46.19
TraesCS5D01G497500.1	Wheat	cytosol	23.53	45.96
TraesCS2D01G057400.2	Wheat	cytosol	42.7	45.9
TraesCS6D01G027200.1	Wheat	cytosol	39.22	45.69
TraesCS3D01G110900.2	Wheat	cytosol	42.27	45.22
TraesCS6D01G027500.1	Wheat	cytosol	42.48	44.42
TraesCS3D01G449500.1	Wheat	cytosol	40.52	43.66
TraesCS3D01G449800.1	Wheat	cytosol, mitochondrion, plasma membrane	26.8	43.62
TraesCS5D01G363100.1	Wheat	cytosol	42.05	42.42
EES04945	Sorghum	cytosol	37.04	40.48
TraesCS6D01G080600.1	Wheat	cytosol	20.7	39.92
TraesCS6D01G080900.1	Wheat	cytosol	23.09	38.41
Os02t0288925-00	Rice	cytosol	34.86	37.74
TraesCS3D01G456400.1	Wheat	cytosol, plastid	12.42	37.25
TraesCS2D01G064400.1	Wheat	cytosol	36.17	37.22
TraesCS7D01G484000.1	Wheat	cytosol, peroxisome, plastid	31.37	35.38
TraesCS3D01G455200.1	Wheat	cytosol	31.37	35.21
TraesCS3D01G455400.1	Wheat	cytosol, peroxisome, plastid	31.37	34.62
TraesCS3D01G456600.1	Wheat	cytosol	29.85	34.6
TraesCS3D01G456200.1	Wheat	cytosol	30.5	34.48
TraesCS3D01G457000.1	Wheat	plasma membrane	29.85	33.5
TraesCS3D01G457100.1	Wheat	cytosol	30.28	33.1
TraesCS7D01G484100.1	Wheat	cytosol	18.74	31.62
TraesCS3D01G455100.1	Wheat	cytosol	30.07	31.15
TraesCS7D01G483700.1	Wheat	cytosol, mitochondrion	30.07	30.87
TraesCS3D01G456800.1	Wheat	cytosol	28.32	28.76
TraesCS6D01G082100.7	Wheat	cytosol	40.3	21.74

Protein Annotations

EnsemblPlants:TraesCS1D01G065900.1	EnsemblPlantsGene:TraesCS1D01G065900	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR33207	PANTHER:PTHR33207:SF22	PFAM:PF00646
SEG:seg	SUPFAM:SSF81383	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1D:+:47648865..47651210

Molecular Weight (calculated)

52737.6 Da

IEP (calculated)

7.662

GRAVY (calculated)

-0.242

Length

459 amino acids

Sequence
(BLAST)

001: MDSVKEILRR VHSEKKPCVD GESHQHSPTS MPAAVSKVLE DDDLLREIIV RVGFPTTLVR ASLVCKRWYH HISDRRFLRR FRERHPPRLL GFCHVPEDEC
101: SQLSCPRFVP ISPQPPELAA MVSRVASYSF GVDGDEWIRE CRRGSVLTGR YEGLLWRHRV HHPLCSGRDM DILPPLPSVQ KSRYHMFTTI LSKEDGAGGL
201: SYMYMLVEGV DENKVFRVRV YMLQRGVWCM HTSSITHIPL PLLPRKVVLV DDKIYIADKF SDDIIVLDLP ASSFSKISVP QGVQYHHYTT ILSRADDASG
301: VYLTHVHVKE LQLCIWLHKG HNWLLVDTIC LRQMWANLRM LDHTVEDEDV DFHFLSHVGD NAEFVFLEMS NCTLHLDVTS RTLRKVDGTP LKNGHFVDVH
401: PFMMIWPPKF PLLKDATART TCEGGYQEAF GWSATMVSSR KSREPHFLSS SSNSLYYNS

Best Arabidopsis Sequence Match ( AT5G15710.1 )
(BLAST)

001: MERLGFWGLL MGSVEKSLDS GNSLACSASA KNGDEESSTS SKQVSPLKGS GSRNTSPLGR VGSRNTSPSR QKVVKTKPRG LEEETVASFG KQVVADVQME
101: DGIWAMLPED LLNEILARVP PFMIFRIRSV CKKWNLILQD NSFLKFHSNV SSHGPCLLTF WKNSPQIPQC SVFSLPLKTW YKIPFTFLPP WAFWLVGSSG
201: GLVCFSGLDG LTFRTLVCNP LMQSWRTLPS MHYNQQRQLI MVVDRSDKSF KVIATSDIYG DKSLPTEVYD SKTDKWSLHQ IMPAVNLCSS KMAYCDSRLY
301: LETLSPLGLM MYRLDSGQWE HIPAKFPRSL LDGYLVAGTQ KRLFLVGRIG LYSTLQSMRI WELDHTKVSW VEISRMPPKY FRALLRLSAE RFECFGQDNL
401: ICFTSWNQGK GLLYNVDKKI WSWISGCALQ SCNSQVCFYE PRFDASVL

Arabidopsis Description

F-box/kelch-repeat protein At5g15710 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFV5]
SUBAcon: [peroxisome,extracellular,endoplasmic reticulum,vacuole,plastid,cytosol,plasma membrane,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.