CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

nucleus 1
plasma membrane 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2
cytosol 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plasma membrane
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plasma membrane
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d015945_P001	Maize	cytosol	93.73	93.29
EES11456	Sorghum	cytosol	38.31	39.55
EES04961	Sorghum	cytosol, peroxisome, plastid	34.7	37.02
TraesCS7D01G484000.1	Wheat	cytosol, peroxisome, plastid	34.7	35.38
EES04945	Sorghum	cytosol	34.46	34.05
TraesCS7D01G483700.1	Wheat	cytosol, mitochondrion	33.73	31.32
TraesCS7A01G496900.1	Wheat	cytosol	20.48	29.21
TraesCS7D01G484100.1	Wheat	cytosol	18.8	28.68
TraesCS7B01G400700.1	Wheat	cytosol	17.59	28.08
KXG29787	Sorghum	cytosol	27.95	27.49
EES06506	Sorghum	cytosol	26.51	27.43
KXG29789	Sorghum	cytosol	26.27	25.65

Protein Annotations

EnsemblPlants:KXG30069	EnsemblPlantsGene:SORBI_3004G131100	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	PANTHER:PTHR33207	PANTHER:PTHR33207:SF22	PFAM:PF12937
ProteinID:KXG30068.1	ProteinID:KXG30069	ProteinID:KXG30069.1	SEG:seg	SUPFAM:SSF81383	UniParc:UPI0001C80D42
UniProt:A0A194YPB6	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:18310542..18314189

Molecular Weight (calculated)

45960.5 Da

IEP (calculated)

6.053

GRAVY (calculated)

0.024

Length

415 amino acids

Sequence
(BLAST)

001: MEIERPPQPP PVAAAVAAAA AISTVLGDDD LLREILVRLG LPTSLLRAAL VCRRWLRHAS DPAFLRRFRD LHPPRLLGAY LSTSAGPAPR LRFLPIRPVP
101: ELAAAARRAG SFFDAFKGSS AAVYDSRGGC LLVTTFDDRH DSTHQVCRPL SPGGDTTVVP PPPPPPPIQL NNDEECLIYH YGEFLRDDGD GRSYFCVVMG
201: FSELQTTVYL YELHDINWVV KASAAAQLAL LPPKSRVMLF DSANFYMLST TNRILVCDFP SSSISVMELP NGVENKPGGC IMLSRGGRSG IFLIYVKEFQ
301: LHIFHHRMGA NDPGNWSLVD SVSLRQVCSN LDMASWQFMD GPSVGVKLCA VGDNAEFVLL EIFGTIVFLD IISRQAEKVY ELTPEDKELV SVRPLMLIWP
401: PVFPQLKDAY YEQKE

Best Arabidopsis Sequence Match ( AT3G16210.1 )
(BLAST)

001: MSKFLPEELA IEILVRLSMK DLARFRCVCK TWRDLINDPG FTETYRDMSP AKFVSFYDKN FYMLDVEGKH PVITNKLDFP LDQSMIDEST CVLHCDGTLC
101: VTLKNHTLMV WNPFSKQFKI VPNPGIYQDS NILGFGYDPV HDDYKVVTFI DRLDVSTAHV FEFRTGSWGE SLRISYPDWH YRDRRGTFLD QYLYWIAYRS
201: SADRFILCFN LSTHEYRKLP LPVYNQGVTS SWLGVTSQKL CITEYEMCKK EIRISVMEKT GSWSKIISLS MSSFISVQDR IYDYQVEFVS FTRKNDLVVT
301: FTGYNDHFEM EPEERTKKKM FLYKTGNERS EEVRFCNPLA GLRFLCECVE TLKIVNRIFI

Arabidopsis Description

Putative F-box protein At3g16210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.