Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 3
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G461800.1 | Wheat | cytosol, peroxisome, plastid | 39.59 | 41.85 |
| TraesCS3D01G456400.1 | Wheat | cytosol, plastid | 15.94 | 40.52 |
| TraesCS3B01G504400.1 | Wheat | cytosol | 42.42 | 40.34 |
| TraesCS3B01G506300.1 | Wheat | cytosol | 41.9 | 40.25 |
| TraesCS3D01G455200.1 | Wheat | cytosol | 41.65 | 39.61 |
| TraesCS3D01G457000.1 | Wheat | plasma membrane | 40.87 | 38.88 |
| TraesCS3A01G463100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 40.87 | 38.88 |
| TraesCS3B01G504300.1 | Wheat | cytosol | 41.39 | 38.8 |
| TraesCS3D01G456200.1 | Wheat | cytosol | 40.36 | 38.67 |
| TraesCS3B01G504600.1 | Wheat | cytosol, peroxisome, plastid | 41.65 | 38.57 |
| TraesCS3D01G457100.1 | Wheat | cytosol | 41.65 | 38.57 |
| TraesCS3D01G455400.1 | Wheat | cytosol, peroxisome, plastid | 40.87 | 38.22 |
| TraesCS3B01G506100.1 | Wheat | cytosol, endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 39.85 | 37.9 |
| TraesCS3B01G505900.1 | Wheat | cytosol | 39.59 | 37.84 |
| TraesCS3A01G461700.1 | Wheat | cytosol | 40.36 | 37.74 |
| HORVU3Hr1G099010.2 | Barley | cytosol | 40.1 | 37.41 |
| TraesCS3D01G456600.1 | Wheat | cytosol | 38.05 | 37.37 |
| EES11456 | Sorghum | cytosol | 37.79 | 36.57 |
| TraesCS3D01G455100.1 | Wheat | cytosol | 39.85 | 34.99 |
| KXG30069 | Sorghum | cytosol, peroxisome, plasma membrane | 37.02 | 34.7 |
| TraesCS3B01G505600.1 | Wheat | cytosol, golgi, peroxisome | 21.59 | 34.29 |
| TraesCS3D01G456800.1 | Wheat | cytosol | 39.59 | 34.07 |
| EES04945 | Sorghum | cytosol | 33.42 | 30.95 |
| EES06506 | Sorghum | cytosol | 29.82 | 28.93 |
| TraesCS3A01G462700.1 | Wheat | cytosol | 30.08 | 28.89 |
| KXG29787 | Sorghum | cytosol | 30.59 | 28.2 |
| KXG29789 | Sorghum | cytosol | 29.82 | 27.29 |
| Os04t0313500-00 | Rice | cytosol | 36.76 | 26.58 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.2 | EntrezGene:8077765 | UniProt:C5Y0J3 | EnsemblPlants:EES04961 | ProteinID:EES04961 |
| ProteinID:EES04961.1 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0031146 | InterPro:IPR001810 |
| PFAM:PF00646 | PANTHER:PTHR33207 | PANTHER:PTHR33207:SF22 | EnsemblPlantsGene:SORBI_3004G131700 | SUPFAM:SSF81383 | UniParc:UPI0001A8540D |
| RefSeq:XP_002451985.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr4:+:19508342..19509729
Molecular Weight (calculated)
43752.0 Da
IEP (calculated)
6.181
GRAVY (calculated)
0.002
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: METNREMTGS STSPSAACAA AISAVLDDDD LLREILLRLA FPTTLVCAAL VCKRWLRHVS EPAFLRRFRE RHPPALLGFY LREMGSWRPQ FVPVSQSPEL
101: SAAIRRASVT DGQFFISDCR NGRLLVTDFD PTSCRQAVLS PLQPTCAKAI LPPPPKHSLI WFFLSEREEE GSNDGAGAIA VLMLPIGTET KLQVDLLTPR
201: SGVWVVRRSE VILLPENLPP IAYTLPPVRG KIYSLTKSGQ VLRLDMAAST SSLLRLPDRV RTDNFMISSG EDGSRLFLIH ADGYQLSVWH LPTTSSDAND
301: WLLVYDKIRV REACNRLEDV LVMAVDDSLE FVFLWLRSSA VLMHMHLPSR NEKVYNELNV RDGYFLDINP FMMVWPPVFP VLREEADLA
101: SAAIRRASVT DGQFFISDCR NGRLLVTDFD PTSCRQAVLS PLQPTCAKAI LPPPPKHSLI WFFLSEREEE GSNDGAGAIA VLMLPIGTET KLQVDLLTPR
201: SGVWVVRRSE VILLPENLPP IAYTLPPVRG KIYSLTKSGQ VLRLDMAAST SSLLRLPDRV RTDNFMISSG EDGSRLFLIH ADGYQLSVWH LPTTSSDAND
301: WLLVYDKIRV REACNRLEDV LVMAVDDSLE FVFLWLRSSA VLMHMHLPSR NEKVYNELNV RDGYFLDINP FMMVWPPVFP VLREEADLA
001: MSCSARLKTN LGMTSALSTH EVLNSNDTMC EILILLPPET IYKLILVSKR WLEIIASPCF RHTYLAKWKP NFELIGFFVC SSMYLGRRID GTRRPRAEPS
101: LPLLSTSSIG DEIESSGILK KLGYYIDSAD GLLLCGRHPK AYYLWDPSTQ KQQQLPRPRV HFEELCMSLI SEDSPDQGFS YKVVRAECVA FPVNSTKVKV
201: ETFSSKTSTW SYSELICLEP LSLSPWTPGR VIKGVVYWHA RGGKIAIYDS NSEEKRIDVI KLPKTYDYDE QVLGETDDGS LQYGWSNKSV MEVWKLEKVG
301: NVLEWNLLFK VNFKAMWKMN QAVATRFSTW TKETQLLALF NQKSDLVYIR CDTQIFIYHT ETKRVEVVQY QGRKSTLVWD FNKVVPYFRR TWPCSPLFEN
401: NAMMIDTPQC NASSAGSN
101: LPLLSTSSIG DEIESSGILK KLGYYIDSAD GLLLCGRHPK AYYLWDPSTQ KQQQLPRPRV HFEELCMSLI SEDSPDQGFS YKVVRAECVA FPVNSTKVKV
201: ETFSSKTSTW SYSELICLEP LSLSPWTPGR VIKGVVYWHA RGGKIAIYDS NSEEKRIDVI KLPKTYDYDE QVLGETDDGS LQYGWSNKSV MEVWKLEKVG
301: NVLEWNLLFK VNFKAMWKMN QAVATRFSTW TKETQLLALF NQKSDLVYIR CDTQIFIYHT ETKRVEVVQY QGRKSTLVWD FNKVVPYFRR TWPCSPLFEN
401: NAMMIDTPQC NASSAGSN
Arabidopsis Description
F-box protein At5g03970 [Source:UniProtKB/Swiss-Prot;Acc:Q94A64]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.