CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0287800-00	Rice	cytosol	12.69	41.46
Os02t0294100-01	Rice	cytosol, mitochondrion, nucleus, plastid	43.28	41.13
Os02t0287900-01	Rice	cytosol	41.54	39.57
Os02t0288000-01	Rice	cytosol	40.05	39.08
KXG30069	Sorghum	cytosol, peroxisome, plasma membrane	39.55	38.31
EES04961	Sorghum	cytosol, peroxisome, plastid	36.57	37.79
EES04945	Sorghum	cytosol	35.07	33.57
KXG29789	Sorghum	cytosol	30.6	28.94
KXG29787	Sorghum	cytosol	29.1	27.73
EES06506	Sorghum	cytosol	27.61	27.68

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.2	EntrezGene:8066812	UniProt:C5YG78	EnsemblPlants:EES11456	ProteinID:EES11456
ProteinID:EES11456.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0005515	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031146	InterPro:IPR001810
PFAM:PF00646	PANTHER:PTHR33207	PANTHER:PTHR33207:SF22	EnsemblPlantsGene:SORBI_3006G221800	SUPFAM:SSF81383	unigene:Sbi.6453
UniParc:UPI0001A86FDD	RefSeq:XP_002447128.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:56837475..56845876

Molecular Weight (calculated)

45107.9 Da

IEP (calculated)

7.203

GRAVY (calculated)

-0.199

Length

402 amino acids

Sequence
(BLAST)

001: MDSTGKTTEP PQLSPQAASA AQISAVPGND DILREILLRL DFPTCLVRAA AVSKRWLRHA SDPAFLRRFR RLHPPRLLGF YLDTSNSWLR FIPLPQPPEL
101: AAVIRRGNFD FGRGAGHVSD CHNGRLIVYI DDRPGKTTVC RPLHPGRGAT VLPLPQIPSV GHDGVDIFSH EFLFHDDGRD DMAISAAAVM RDLWQARVQL
201: QDFQAGDWGQ ARNSDLIQLP GRWKRCEHSA LLAHGKIYLI CMSQYILGID IQSLSMFSIK LPNGVEFEYD ANIALSRAEG SGFCLVHVRR FQISAWRYTM
301: DPSSTGNWEL IDTVSLRQVF GPNADPTWSS QGADVRVAAV GDNADFVFLR IQKKVFYLHI SSRTVEKVYE LAQHESLFGI YPFMMVWPPT FPTLNGGHDN
401: DE

Best Arabidopsis Sequence Match ( AT5G49610.1 )
(BLAST)

001: MDNQKGALFP DEVILQILAR LPVKSLFRFK SVCKSWYRLP SDKYFTSLFN QLSVKEQLLV AEVSDSSSLI CVDNLRGVSE LSLDFVRDRV RIRVSSNGLL
101: CCSSIPEKGV YYVCNPSTRE YRKLPKSRER PVTRFYPDGE ATLVGLACDL SKNKFNVVLA GYHRSFGQRP DGSFICLVFD SESNKWRKFV SVLEECSFTH
201: MSKNQVVFVN GMLHWLMSGL CYILALDVEH DVWRKISLPD EIRIGNGGGN RVYLLESDGF LSVIQLSDVW MKIWKMSEYE TETWSVVDSI SLRCIKGLVP
301: GIFPICQTGE YVFLATHKQV LVYQRRSKLW KEMFSVKGSS SLPLWFSAHA FRSTIVPCN

Arabidopsis Description

F-box protein At5g49610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGY4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.