Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0294100-01 | Rice | cytosol, mitochondrion, nucleus, plastid | 43.9 | 12.77 |
| EES11456 | Sorghum | cytosol | 41.46 | 12.69 |
| Os02t0288000-01 | Rice | cytosol | 42.28 | 12.62 |
| Os02t0287900-01 | Rice | cytosol | 39.84 | 11.61 |
| Os02t0288925-00 | Rice | cytosol | 39.84 | 11.56 |
| Os04t0313500-00 | Rice | cytosol | 34.96 | 7.99 |
Protein Annotations
| EnsemblPlants:Os02t0287800-00 | EnsemblPlantsGene:Os02g0287800 | Gene3D:1.20.1280.50 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | InterPro:IPR001810 | PANTHER:PTHR31264 | PANTHER:PTHR31264:SF10 | PFAM:PF12937 |
| ProteinID:BAS78163.1 | SEG:seg | SUPFAM:SSF81383 | UniParc:UPI0001C7D772 | UniProt:A0A0P0VHP5 | MapMan:35.2 |
Description
Os_F0478F-box domain, Skp2-like domain containing protein. (Os02t0287800-00)
Coordinates
chr2:+:10854309..10855575
Molecular Weight (calculated)
12860.7 Da
IEP (calculated)
11.452
GRAVY (calculated)
0.107
Length
123 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGQGTHPAM PAAAVSVVLD DDDLLREIIL RLAFPTDLVR AAAVCRRWLR VASAPAFLRR YRALHPPRVL GLFAKHAGAR CSSLSPIPAG SPPPRAAPRR
101: APCSAPSAAA SRCPCTTAAT AAS
101: APCSAPSAAA SRCPCTTAAT AAS
001: MSKFLPEELA IEILVRLSMK DLARFRCVCK TWRDLINDPG FTETYRDMSP AKFVSFYDKN FYMLDVEGKH PVITNKLDFP LDQSMIDEST CVLHCDGTLC
101: VTLKNHTLMV WNPFSKQFKI VPNPGIYQDS NILGFGYDPV HDDYKVVTFI DRLDVSTAHV FEFRTGSWGE SLRISYPDWH YRDRRGTFLD QYLYWIAYRS
201: SADRFILCFN LSTHEYRKLP LPVYNQGVTS SWLGVTSQKL CITEYEMCKK EIRISVMEKT GSWSKIISLS MSSFISVQDR IYDYQVEFVS FTRKNDLVVT
301: FTGYNDHFEM EPEERTKKKM FLYKTGNERS EEVRFCNPLA GLRFLCECVE TLKIVNRIFI
101: VTLKNHTLMV WNPFSKQFKI VPNPGIYQDS NILGFGYDPV HDDYKVVTFI DRLDVSTAHV FEFRTGSWGE SLRISYPDWH YRDRRGTFLD QYLYWIAYRS
201: SADRFILCFN LSTHEYRKLP LPVYNQGVTS SWLGVTSQKL CITEYEMCKK EIRISVMEKT GSWSKIISLS MSSFISVQDR IYDYQVEFVS FTRKNDLVVT
301: FTGYNDHFEM EPEERTKKKM FLYKTGNERS EEVRFCNPLA GLRFLCECVE TLKIVNRIFI
Arabidopsis Description
Putative F-box protein At3g16210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.